BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg320417 Length=1335 Score E Sequences producing significant alignments: (Bits) Value AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2008 0.0 > AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187775 FORWARD LENGTH=1529 Length=1529 Score = 2008 bits (1087), Expect = 0.0 Identities = 1255/1336 (94%), Gaps = 12/1336 (1%) Strand=Plus/Plus Query 1 ATGATTC-CCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAACGG 59 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 85 ATGA-TCACCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAATGG 143 Query 60 TCTCTTTGTTGTTACTATTGGCTGGTTTGTAGATAGCGTCAAGAGAAACCTCAGGATGAG 119 ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 144 TCTCTTTGTTGTTACGATTGGCTGGTTTGTAGATAGCGTCAAGAGGAACTTCAGGATGAG 203 Query 120 TGAATCACTTTACAATGTTAAACAACTTGGACAAAATTGCGAAAAGGGGAATGAGCTGAG 179 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 204 CGAATCACTTTACAATGTTAAACAACTTAGACAAAATTGCGAAAAGGGGGATGAGCTGAG 263 Query 180 CCGGGTTTTTGATCTCG-AACATATTTGTCGTCCTCGTCAAATTCAAGCTGTAAATTTTG 238 |||||||||||| |||| ||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 264 CCGGGTTTTTGACCTCGAAAC-TATTTGTCGTCCTCGACAAATTCAAGCTGTACATTTTG 322 Query 239 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 382 Query 299 ACATGACTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGGC 358 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 383 ACATGAGTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGCC 442 Query 359 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAAGTGATTGATTCATGGTTTATTG 418 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct 443 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAGGTCATCGATTCATGGTTTATTG 502 Query 419 GTTGCAATGCAAGTCTTGTCGTGTGTGAAGGTGCTTCTATCCAGAGATATCTTGGCCATG 478 |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 503 GTTGCAATGCAAGTTTTGTCGTGTGTGAAGGTGCTTCTATTCAGAGATACCTTGGCCATG 562 Query 479 CCAACACCATTGTCTCGCCACTATGGGTTCTGAAAACAGTGGAGAGACATCGACAAAGAC 538 |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 563 CCAAAACCATTGTCTCACCACTATGGGTTCTGAAAACAGTGGAGAAACATCGACAAAGAC 622 Query 539 TTGTTCATATGTCACCTGATTTAGCCAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 598 |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 623 TTGTACACATGTCACCTGATTTAGCTAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 682 Query 599 ATGGTACTGCAAAAGAGAAAATTTGCGAGCAAGGTAATTCTCAAGATGCTTTTAAATTCA 658 ||||| | ||||| |||||||||| || |||||||||||||||||| |||||||||| || Sbjct 683 ATGGTGCGGCAAATGAGAAAATTTCCGGGCAAGGTAATTCTCAAGAGGCTTTTAAATCCA 742 Query 659 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACTGGTGTTAGGA 718 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 743 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACGGGGGTTAGGA 802 Query 719 GACGGCGTGCTCGCTATATGCAGACTTGTCAAAACCCAATAAGACGCATAACACAA-AGC 777 |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| | | Sbjct 803 GACGACGTGCTCGCCATATGCAGACTTGCCAAAACCCAATAAGACGCATAACACAGTA-C 861 Query 778 AGCCTGCTGGAGAATATTTGCTGGACAATATCTGAAGCAGCGTCAACCGCCACTATTTTT 837 ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 862 AGCCTGCTGGACAATATTTGCTGGACAATATCTGAAGCAGCTTCAGCCGCCACTATTTTT 921 Query 838 ACTGATCCTTGCAGCAGCAGTCGTGACATCAGTGAACCCCAGCTTTCTGTTGTACAAGAA 897 ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 922 ACTGA-C-----AGCAGCAGTCGTGACATCAGTGAACCCCAGCCTTCTGTTGTACAAGAT 975 Query 898 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCGCTCACC 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 976 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCACTAACC 1035 Query 958 GAGAGCGAAAAGACGGAAGTAATATTTAAAGACAGCTTCCTTACAATTCTATTTCCAGCT 1017 ||||| || ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1036 GAGAGTGAGAAGACAGAAGTGATATTTAAAGACAGCTTCCTTACAATTCTATATCCAGCT 1095 Query 1018 GATCGGTTCTCGGAGATTGGACCATCTTCACGCACTTATTTTAGTGATAGCGGTTTCACT 1077 ||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||| Sbjct 1096 GATCGGTTCTCGGAGATGGGACCTTCTTCACGGACTTATTTCAGTGATAGTGGTTTCACT 1155 Query 1078 TGCCTGCAAATCTTAAACTATATCCACAGATTTTATCAGGAGAACTTGCCGGATCATGAA 1137 ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1156 TGCCTGCAAATCTTAGACTATATCTACAGATTTTACCAGGAGAACTTGCCGGATCATGAA 1215 Query 1138 ATAGAGGTTGCGATTCACACAGACTCGAGGCACGCTGACCGGCTCAGAACAGTGTATTGC 1197 ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1216 ATAGAAGTTGCAATTCACACAGACTCGAGGCACGCTGACCGTCTCAGAACAGTGTATTGC 1275 Query 1198 AGCAAAGAGACATCAGATGAAGGACACATCGTTTTCCCGAGAATAGAGTTACTGGGAAGC 1257 |||||||||||||||||||||||| | | |||||||| |||||||||||| | |||||| Sbjct 1276 AGCAAAGAGACATCAGATGAAGGATGCTTGGTTTTCCCAAGAATAGAGTTATTAGGAAGC 1335 Query 1258 AGGAAAAGTTTCGAAATGCTTAAGCGTGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1317 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1336 AGGAAAAGTTTCGAAATGCTTAAGCGAGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1395 Query 1318 CTCATGATTAGAGCTT 1333 || ||||||||||||| Sbjct 1396 CTTATGATTAGAGCTT 1411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65712513405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5