BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320417
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2008 0.0
> AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1);
Has 29 Blast hits to 29 proteins in 9 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187775
FORWARD LENGTH=1529
Length=1529
Score = 2008 bits (1087), Expect = 0.0
Identities = 1255/1336 (94%), Gaps = 12/1336 (1%)
Strand=Plus/Plus
Query 1 ATGATTC-CCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAACGG 59
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 85 ATGA-TCACCTCATGTGGACGTAAGTTTGAGCACACTTTGAAACATGGGGCAAGAAATGG 143
Query 60 TCTCTTTGTTGTTACTATTGGCTGGTTTGTAGATAGCGTCAAGAGAAACCTCAGGATGAG 119
||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 144 TCTCTTTGTTGTTACGATTGGCTGGTTTGTAGATAGCGTCAAGAGGAACTTCAGGATGAG 203
Query 120 TGAATCACTTTACAATGTTAAACAACTTGGACAAAATTGCGAAAAGGGGAATGAGCTGAG 179
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 204 CGAATCACTTTACAATGTTAAACAACTTAGACAAAATTGCGAAAAGGGGGATGAGCTGAG 263
Query 180 CCGGGTTTTTGATCTCG-AACATATTTGTCGTCCTCGTCAAATTCAAGCTGTAAATTTTG 238
|||||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 264 CCGGGTTTTTGACCTCGAAAC-TATTTGTCGTCCTCGACAAATTCAAGCTGTACATTTTG 322
Query 239 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GCACATCAACGAAGAACCACCAAGTATCTTCTTCTGGAACAGAGTCTGGCACTAGTGTAG 382
Query 299 ACATGACTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGGC 358
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 383 ACATGAGTCTTGCTGACCATTGCATGTATGTTGATTCAGACATTTCAGATGAACTCCGCC 442
Query 359 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAAGTGATTGATTCATGGTTTATTG 418
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 443 TTAAGGTGTTAAAGGTTGCTGGAGAGCAAGGAGCAAAGGTCATCGATTCATGGTTTATTG 502
Query 419 GTTGCAATGCAAGTCTTGTCGTGTGTGAAGGTGCTTCTATCCAGAGATATCTTGGCCATG 478
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 503 GTTGCAATGCAAGTTTTGTCGTGTGTGAAGGTGCTTCTATTCAGAGATACCTTGGCCATG 562
Query 479 CCAACACCATTGTCTCGCCACTATGGGTTCTGAAAACAGTGGAGAGACATCGACAAAGAC 538
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 CCAAAACCATTGTCTCACCACTATGGGTTCTGAAAACAGTGGAGAAACATCGACAAAGAC 622
Query 539 TTGTTCATATGTCACCTGATTTAGCCAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 598
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 623 TTGTACACATGTCACCTGATTTAGCTAGACAGTTAGGATTAATGCTTGAAAATTTTGAAG 682
Query 599 ATGGTACTGCAAAAGAGAAAATTTGCGAGCAAGGTAATTCTCAAGATGCTTTTAAATTCA 658
||||| | ||||| |||||||||| || |||||||||||||||||| |||||||||| ||
Sbjct 683 ATGGTGCGGCAAATGAGAAAATTTCCGGGCAAGGTAATTCTCAAGAGGCTTTTAAATCCA 742
Query 659 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACTGGTGTTAGGA 718
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 743 GAAGTTTATCAAAACAAGAACGGAAAGAGACTGTAAATATAGCTAAAACGGGGGTTAGGA 802
Query 719 GACGGCGTGCTCGCTATATGCAGACTTGTCAAAACCCAATAAGACGCATAACACAA-AGC 777
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 803 GACGACGTGCTCGCCATATGCAGACTTGCCAAAACCCAATAAGACGCATAACACAGTA-C 861
Query 778 AGCCTGCTGGAGAATATTTGCTGGACAATATCTGAAGCAGCGTCAACCGCCACTATTTTT 837
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 862 AGCCTGCTGGACAATATTTGCTGGACAATATCTGAAGCAGCTTCAGCCGCCACTATTTTT 921
Query 838 ACTGATCCTTGCAGCAGCAGTCGTGACATCAGTGAACCCCAGCTTTCTGTTGTACAAGAA 897
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 922 ACTGA-C-----AGCAGCAGTCGTGACATCAGTGAACCCCAGCCTTCTGTTGTACAAGAT 975
Query 898 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCGCTCACC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 976 GGGATAGATAAAGGGTTAGATCCAGTGGCTTCTTTTTCAAATTCAACCAGAGCACTAACC 1035
Query 958 GAGAGCGAAAAGACGGAAGTAATATTTAAAGACAGCTTCCTTACAATTCTATTTCCAGCT 1017
||||| || ||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1036 GAGAGTGAGAAGACAGAAGTGATATTTAAAGACAGCTTCCTTACAATTCTATATCCAGCT 1095
Query 1018 GATCGGTTCTCGGAGATTGGACCATCTTCACGCACTTATTTTAGTGATAGCGGTTTCACT 1077
||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 1096 GATCGGTTCTCGGAGATGGGACCTTCTTCACGGACTTATTTCAGTGATAGTGGTTTCACT 1155
Query 1078 TGCCTGCAAATCTTAAACTATATCCACAGATTTTATCAGGAGAACTTGCCGGATCATGAA 1137
||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1156 TGCCTGCAAATCTTAGACTATATCTACAGATTTTACCAGGAGAACTTGCCGGATCATGAA 1215
Query 1138 ATAGAGGTTGCGATTCACACAGACTCGAGGCACGCTGACCGGCTCAGAACAGTGTATTGC 1197
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1216 ATAGAAGTTGCAATTCACACAGACTCGAGGCACGCTGACCGTCTCAGAACAGTGTATTGC 1275
Query 1198 AGCAAAGAGACATCAGATGAAGGACACATCGTTTTCCCGAGAATAGAGTTACTGGGAAGC 1257
|||||||||||||||||||||||| | | |||||||| |||||||||||| | ||||||
Sbjct 1276 AGCAAAGAGACATCAGATGAAGGATGCTTGGTTTTCCCAAGAATAGAGTTATTAGGAAGC 1335
Query 1258 AGGAAAAGTTTCGAAATGCTTAAGCGTGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1317
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1336 AGGAAAAGTTTCGAAATGCTTAAGCGAGTGAATGGAGAGAACAACAGTAATGTTTATGAG 1395
Query 1318 CTCATGATTAGAGCTT 1333
|| |||||||||||||
Sbjct 1396 CTTATGATTAGAGCTT 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5