BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320424

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26320.1 | Symbols: AGL33 | AGAMOUS-like 33 | chr2:11205389-...   278    2e-74


> AT2G26320.1 | Symbols: AGL33 | AGAMOUS-like 33 | chr2:11205389-11206287 
REVERSE LENGTH=330
Length=330

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 242/286 (85%), Gaps = 8/286 (3%)
 Strand=Plus/Plus

Query  1    ATGGGGAGGAAGAAAA-TAAAACTAAATAGAATAGAAAGCCTAAAAGAGAGAAGTAGCAA  59
            ||||||||||| |||| ||||| | || ||||||||   |||||||||||||||||||||
Sbjct  49   ATGGGGAGGAA-AAAACTAAAATTGAAGAGAATAGAGTCCCTAAAAGAGAGAAGTAGCAA  107

Query  60   ATACTCAAAACGTAAACAAGGGCTTTTCAAGAAGGCAGAAGAAGTAGCACTGTTATGCGA  119
            ||  |||||||||||| |||| ||||| || |||||||||||||||||| ||||||||||
Sbjct  108  ATTTTCAAAACGTAAAAAAGGTCTTTTTAAAAAGGCAGAAGAAGTAGCATTGTTATGCGA  167

Query  120  -TTGTGAAATCATTTTGATTGTTGTTTCTCCGACGGATAAGCCTACCCTTTTCCACACCC  178
             | | || || || || |||||||||||||| || || ||||||||  ||||  |||| |
Sbjct  168  CTCG-GATATAATGTTAATTGTTGTTTCTCCCACCGAGAAGCCTACAGTTTTTAACACTC  226

Query  179  GTTCTAAG-TCCTTTAATAAAAT-CTATGATAGGTATTGCATGCTTTCATTACAAGAACG  236
            ||||| || || ||  ||| ||| || ||| |||| ||||||||||||||||||||||||
Sbjct  227  GTTCT-AGATCATTCCATACAATCCT-TGAGAGGTTTTGCATGCTTTCATTACAAGAACG  284

Query  237  GGAAGAAAGGTGTGATCTTTCAGATTTGTATATTATTATTACATAA  282
            |||||| ||||||||||||||| |||| ||||| ||||||||||||
Sbjct  285  GGAAGAGAGGTGTGATCTTTCATATTTTTATATAATTATTACATAA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5