BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320426
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26340.2 | Symbols: | unknown protein. | chr2:11215252-1121... 979 0.0
> AT2G26340.2 | Symbols: | unknown protein. | chr2:11215252-11217033
FORWARD LENGTH=839
Length=839
Score = 979 bits (530), Expect = 0.0
Identities = 642/691 (93%), Gaps = 28/691 (4%)
Strand=Plus/Plus
Query 7 TCACTTCACGCTACCGTGAGCCTCCCAC--TTCTCCACAATCCAAACCGCAAAAAGCTAA 64
||||| |||||||||||||||||||||| ||||||| | | |||||| |||||||||||
Sbjct 78 TCACTCCACGCTACCGTGAGCCTCCCACTGTTCTCCA-ACT-CAAACCACAAAAAGCTAA 135
Query 65 CGTGCGCAGCTACATTATCACCTCCGCCATGGAAACAGAGCCGGCGAGTTAtctccgtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGTGCGCAGCTACATTATCACCTCCGCCATGGAAACAGAGCCGGCGAGTTATCTCCGTCT 195
Query 125 ccttcttcctctcccgcctcctcctcctccctAACGATGCTATGGCTGGTAGCTTAATGG 184
|||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 196 CCTTTTTTCTCTCCCGTCTCCTCCTCCTCCCTAACGATGCTATGGCTGGTGGCTTAATGG 255
Query 185 AT-AA----AT--AT--GTCAAGAGGAAAAAACTTGATCCACTTGAAGCATATGTACCAC 235
|| || || || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 256 ATAAATTGGATAAATACGTCAAGAGGAAGAAACTTGATCCACTTGAAGCATATGTACCAC 315
Query 236 CAGTGATTCTAGCTCAGTTACAAATCCAGGATCTTGAGGAATTTTTGAATGTGGAGAAGC 295
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 316 CAGTGATTCTAGCTCAGTTACAAATCCAGGATCTTGAGGGATTTTTGAATGTGGAGAAAC 375
Query 296 CTGAATTCGAGGCGTGTAGACGTCAATTGCGGTCTGGTCCTGCTAGTTCT-TTGCGTGTA 354
||||||| |||||||||||||| ||||||||||||||||||||||| ||| || ||||||
Sbjct 376 CTGAATTTGAGGCGTGTAGACGCCAATTGCGGTCTGGTCCTGCTAGCTCTCTT-CGTGTA 434
Query 355 AACATTCGAGCTGTTGCTCAGTATGCTTCAGATGATGGTGTT-TCCAAAACTGCGACTGA 413
||||||||| ||| |||||||||||||||||| || |||||||| || |||||
Sbjct 435 AACATTCGA------GCT---TATGCTTCAGATGATGGT-TTCTCCAAAACCGCCACTGA 484
Query 414 TGATGTTGATCGTTGTTTAAGAGCATTGGAAGAACTGGATTCGTTGTTTCTACGTGCGTC 473
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGATGTTGATCGATGTTTAAGAGCATTGGAAGAACTGGATTCGTTGTTTCTACGTGCGTC 544
Query 474 GAGGAAAGATTCAAATGCAACTGTTG-AGTTGATGAAGTCACAGCTTGGAACAGCGTTAA 532
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 545 GAGGAAAGATTCAAATGCAACTGTTGTA-TTGATGAAGTCACAGCTTGGAACAGCGTTAA 603
Query 533 CCGCACTGGACAGTCTTCTACAAACGGTTCCTTCTCAAGTCCTTGATAAAGGGAAAGCTA 592
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 604 CCGCACTGGACAGTCTTCTACAAACAGTTCCTTCTCAAGTGCTTGATAAAGGGAAAGCTA 663
Query 593 TGGTGGAAGTCTACAGATCAGCATCTGAACAAGAAGCGGGAAGTGATGATTTAGAATCCT 652
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 664 TGGTGGAAGTCTACAGATCAGCATCTGAAGAAGATGCGGGAAGTGATGATTTAGAATCCT 723
Query 653 CTGAGATAAAGCAGCTCCAATCCATACTGTG 683
||||||||||||||||||| |||||||||||
Sbjct 724 CTGAGATAAAGCAGCTCCAGTCCATACTGTG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5