BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320428
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26360.1 | Symbols: | Mitochondrial substrate carrier famil... 1838 0.0
> AT2G26360.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:11221516-11223213 REVERSE LENGTH=1304
Length=1304
Score = 1838 bits (995), Expect = 0.0
Identities = 1115/1173 (95%), Gaps = 8/1173 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAATGAGGAACAGA-TTACTTTTCAACGTTTGTCCACAGATCCACTGAAATCAAC 59
|||| | |||| ||||||| ||| ||||||| |||| |||||||||||||||||||||||
Sbjct 47 ATGACGGATGAAGAACAGAGTTAGTTTTCAAGGTTTATCCACAGATCCACTGAAATCAAC 106
Query 60 AATGGTGAATAAAGCTCGGAAGAAGAAACATGTATCGCCTGAATCTCTACTTCTCTCTAT 119
||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 107 AATGGTGAATAAAGCTCCGAAGAGGAAACATGTATCACCTGAATCTCTCCTTCTCTCTAT 166
Query 120 TCTCAATGA--T-TTGTTTCTAAATTCTCAAAAGCTTGAGTCTTGTTTTCGCA-AAACAA 175
||||||||| | |||||||||||||||||||||||||| |||||||| || | ||| |
Sbjct 167 TCTCAATGATTTGTTGTTTCTAAATTCTCAAAAGCTTGACTCTTGTTTCCGTAGAAA-AT 225
Query 176 CGAATTCAGATGCGCGTAGCTTTATAGGTAGCTTAAATTTTGCAAAAGTTGGAAACTTTA 235
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 226 CGAATTCAGATGCGTGTAGCTTTATAGTTAGCTTAAATTTTGCAAAAGTTGGAAATTTTA 285
Query 236 CTTCAAGATCCAATGAAACAGCTCCATTGATCAGTGAAGCTGTTGCTAAAGGCAATAACT 295
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 286 CTTCAAGATCCAATGAAATTGCTCCATTGATCAATGAAGCTGTTGCTAAAGGCAAGAACT 345
Query 296 TTGATACTGGGACAAGAGTTGGATTAGATGTTGGCCATCTTCTTAAATCTGCATTAGCTG 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 346 TTGATACTGGGACAAGAGTTGGATTAGATGTTGGTCATCTTCTTAAATCTGCATTAGCTG 405
Query 356 GAGGAATTTCATGTGCTTTCTCTGCTTTTTTGATGCATCCAGTGGATACTGTCAAGACAC 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GAGGAATCTCATGTGCTTTCTCTGCTTTTTTGATGCATCCAGTGGATACTGTCAAGACAC 465
Query 416 AAGTTCAAGCATCAACTACATTGTCGTTTCTTGAAATATTGTCAAAGATTCCAGAGATTG 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 466 AAGTTCAAGCATCAACTACATTGTCGTTTCTCGAAATATTGTCAAAGATTCCAGAGATTG 525
Query 476 GTGCTCGAGGTTTATACAAAGGCTCGATTCCCGCTGTTGTTGGTCAATTTGCAAGCCATG 535
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 526 GTGCTCGAGGTTTATACAAAGGCTCGATTCCGGCTGTTGTTGGTCAATTTGCTAGTCATG 585
Query 536 GTTTACGAACAAGTATATATGAAGCAAGTAAA-TTGGCATTACCGCTCGTTGCTCCTACT 594
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 586 GTTTACGAACAAGTATATATGAAGCAAGTAAACTT-GCGTTACCGCTCGTTGCTCCTACT 644
Query 595 CTCCTTGATATTCAAGTTCAGTCAATCGCGTCTTTTCTTGGTACAGTTTTGGGGACAACA 654
|| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 645 CTTCTTGATATTCAAGTTCAGTCAATCGCGTCTTTTATTGGTACGGTATTGGGGACAACG 704
Query 655 TTGCGAATACCGTGTGAGGTGTTGAAACAACGGTTACAAGCCAACCAGTTTGATAACATA 714
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTGCGAATACCGTGTGAAGTGTTGAAACAACGGTTACAAGCCAACCAGTTTGATAACATA 764
Query 715 GTGGAAGCTACGGTTTCGGTTTGGCATCAAGATGGGCTCAAAGGACTCTTTCGTGGGACC 774
||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 765 GTGGAAGCTACAGTTTCGACTTGGCATCAAGAAGGGCTCAAAGGACTCTTTCGTGGGACC 824
Query 775 GGTGTTACCCTTCTACGCGAGGTTCCCTTCTACGTTGCAGGCATGGGACTTTACAACCAA 834
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 825 GGTGTTACCCTTCTACGTGAGGTTCCCTTCTACGTTGCTGGCATGGGACTTTACAACCAA 884
Query 835 TCAAAGAAGGTGGTGGAGAGACAATTAGGAAGAGAGTTGGAGCCGTGGGAAGCCATCGCG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCAAAGAAGGTGGTGGAGAGACAATTAGGAAGAGAGTTGGAGCCGTGGGAAGCCATCGCG 944
Query 895 GTTGGAGCCTTGTCTGGTGGTTTCACTGCAGTCTTAACAACGCCATTCGATGTGATTAAA 954
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 GTTGGAGCCTTGTCCGGTGGTTTCACTGCAGTTTTAACAACGCCATTCGATGTGATTAAA 1004
Query 955 ACAAGAATGATGACGGCTCCACAAGGCGTGGAATTGTCAATGTGGATGGCTGCCTATTCA 1014
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1005 ACAAGAATGATGACGGCTCCACAAGGCGTGGAATTGTCGATGTTGATGGCTGCTTATTCA 1064
Query 1015 ATTCTCACACATGAGGGTCCTCTTGCTTTCTACAAAGGAGCTGTTCCAAGGTTCTTCTGG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1065 ATTCTCACACATGAGGGTCCTCTTGCTTTCTACAAAGGAGCTGTTCCAAGGTTTTTCTGG 1124
Query 1075 ACTGCTCCTCTCGGAGCCTTAAACTTAGCTGGCTATGAAATTCTTCAAAAGGCTATGATC 1134
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1125 ACTGCTCCTCTCGGAGCCTTGAACTTAGCTGGCTATGAACTTCTTCAAAAGGCTATGATC 1184
Query 1135 ACACCTCTGAATCAATCAGGGCATAATGAGTAA 1167
||||||||||||||||||| ||||| |||||||
Sbjct 1185 ACACCTCTGAATCAATCAGTGCATAGTGAGTAA 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5