BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320449
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26590.1 | Symbols: RPN13 | regulatory particle non-ATPase 1... 1393 0.0
> AT2G26590.1 | Symbols: RPN13 | regulatory particle non-ATPase
13 | chr2:11311004-11315096 REVERSE LENGTH=1183
Length=1183
Score = 1393 bits (754), Expect = 0.0
Identities = 861/912 (94%), Gaps = 9/912 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAGTGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 60
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 ATGAGTTCAAGCGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 162
Query 61 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 222
Query 121 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAACACAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 223 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTA 282
Query 181 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 342
Query 241 GACAGGGTGTTTATTCTGAAGTTCAACAGTGACGACCGCAAGTTGTTCTTTTGGATGCAG 300
|||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 343 GACAGGGTGTATATTCTGAAGTTCAACAGTGATGACCGCAAGTTATTCTTCTGGATGCAG 402
Query 301 GAGCCAAGAGCTGAAGGTGATGCTGAACTGTGCTCTTTGGTCAATCAATACCTCAATCAA 360
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct 403 GAGCCAAGAGCTGAAGGTGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAA 462
Query 361 CCACTAGGCATAAAAGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 420
| | | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 -C-C-A--C-T---AGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 513
Query 421 CTGGAAGACATGGCAGAGGATAATGCCTCGTCTAGAGCTGGAAACTTGGTTGTACCAAAT 480
|||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 514 CTGGAAGACATGGCAGAGGATAATACATCATCTAGAGCGGGAAACTTGGTTGTACCAAAT 573
Query 481 TTGTCTACAGAGGTGAGTGACGTGACATCTTCGTCTGGACCAGTTAAGCTGGCAGACCTG 540
|||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 574 TTGTCTTCAGAGGTGAGTGACGTGACATCGTCCTCTGGACCGGTTAAGCTGGCAGACCTG 633
Query 541 CAAAGAATTCTGAACAACCTCTCTGGTGTCCCTGTAGGTATTGCTGGAGATGAAGACGAA 600
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 634 CAAAGAATTCTGAACAACCTCTCTGGTGGCCCTGTAGGTATTGCTGGAGATCAAGACGAA 693
Query 601 GGTTTAGCATTAGGGGATATCTTGAAGCCGGAGTTGATAATGCCATTGCTTGAGACGTTG 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 694 GGTTTAGCATTAGGGGATATCTTGAAACCGGAGTTGATAATGCCATTGCTTGAGGCGTTG 753
Query 661 CCTGTACAAGAACGACTATCTTTGCATTTACCTGAGGGTCACTCTAGGGCAGAAGATATA 720
|| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 754 CCGGTACAAGAACGACTATCTTCGCATTTACCTGAGGGTCATTCTAGGGCAGAAGATATA 813
Query 721 CTGGAGTTGTTGCAGAGCCCTCCTTTCCGTCAACAAGTAGATGCGTTTACCTATGTACTT 780
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 814 CTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATGTACTC 873
Query 781 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAGATACAAGTTCACA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 874 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATACAAGTTCACA 933
Query 841 GTTGTCTCATTCCTTGAGGCACTAGAGGACTCGGTTGCAACGCAATCAACAGAGGCAATG 900
|| | |||||||||||| ||||| || ||||||||| |||||||||||| || || |||
Sbjct 934 GTGGACTCATTCCTTGAAGCACTTGAAGACTCGGTTTCAACGCAATCAAGGGATGCGATG 993
Query 901 GATGAGAGCTAA 912
|||||||| |||
Sbjct 994 GATGAGAGTTAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5