BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320472

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26840.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   545    2e-154


> AT2G26840.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G43910.1). | chr2:11447197-11448949 
REVERSE LENGTH=1208
Length=1208

 Score =  545 bits (295),  Expect = 2e-154
 Identities = 322/335 (96%), Gaps = 2/335 (1%)
 Strand=Plus/Plus

Query  531   GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG  590
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  726   GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG  785

Query  591   CTTTTGTGTCATTCCAGTTTCTGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG  650
             ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  786   CTTTTGTGTTATTCCGGTTTCCGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG  845

Query  651   GAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC  710
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  846   AAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC  905

Query  711   GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG  770
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  906   GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG  965

Query  771   TGAAGCCCTTAAAACAGAGAAGTTGTTGATCCAGCCACAAG-AATTGGTTTCTCAGGTTA  829
             ||||||||||||||||||||| ||||||||||||||| ||| ||||  | ||||| ||||
Sbjct  966   TGAAGCCCTTAAAACAGAGAAATTGTTGATCCAGCCA-AAGGAATTACTCTCTCAAGTTA  1024

Query  830   ACTACGTAGAAAACCAGTTAGTGGAGATTAAATAG  864
             ||||| |||||||||||||||||||| ||||||||
Sbjct  1025  ACTACTTAGAAAACCAGTTAGTGGAGGTTAAATAG  1059


 Score =  457 bits (247),  Expect = 1e-127
 Identities = 308/336 (92%), Gaps = 9/336 (3%)
 Strand=Plus/Plus

Query  1    ATGGCAACAACGGCGTACGGCCAACCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG  60
            |||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  79   ATGGCAACGACAGTGTACGGCCAAGCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG  138

Query  61   CTCAGACCTTTCCTTTCTCTCTC-CTCGCCGTCTTTTACAGCCCCGTTC-CGGCGGCGAC  118
             |||| ||  |  |||||||||| |||||||||||| ||||| |||||| |  || || |
Sbjct  139  GTCAGGCC--T--TTTCTCTCTCACTCGCCGTCTTTCACAGCTCCGTTCAC-TCGTCGGC  193

Query  119  GGGA-TTTCTCGTTTAGTGCTCTTCCAACGACGAAAGCTATTGACGCGGCGTTAATGAAG  177
             ||| |||| |||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct  194  -GGAGTTTCCCGTTTAGTGCTCTTCCTACGACGAAAGCCATAGACGCGGCGTTAATGAAG  252

Query  178  GAGAAATGGTTGGATtctctctctctcACCTCACAAGACGAAGATACGACTCCGGAGAAT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  GAGAAATGGTTGGATTCTCTCTCTCTCACCTCACAAGACGAAGATACGACTCCGGAGAAT  312

Query  238  GCTGAGTCAAACTGCATCATTGGGGTTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG  297
            |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  313  GCTGAGTCAAGCTGTATCATTGGGATTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG  372

Query  298  AAATTTGACCACTTGGGTTCTTCTTCTTCTGCTCAG  333
            |||||||||||||||||||||||||||| |||||||
Sbjct  373  AAATTTGACCACTTGGGTTCTTCTTCTTTTGCTCAG  408


 Score =  252 bits (136),  Expect = 5e-66
 Identities = 152/160 (95%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  334  GTTTATGATACACCTCACATCCCAGTTTTAGTTGGGAAAAGAGTGAGAAAACGTTTGGAT  393
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  568  GTTTATGATACACCTCACATTCCAGTTTTAGTTGGGAAAAGAGTAAGAAAACGTTTGGAT  627

Query  394  GCAAAGTCAATTGTTCAATTGATTCAGAGTTTAGATGTTCCTTCTGGAAGCAGAGTATAT  453
            |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct  628  GCAAAGTCAATTGTACAATTGATTCAGAGCTTAGATGTTCCCTCAGGAAGCAGAGTGTAT  687

Query  454  ATAGAACAATCGAATCCGTTTCCAAAAGATGGAAAACAGG  493
            ||||||||||||||||||||||| ||||||||||||||||
Sbjct  688  ATAGAACAATCGAATCCGTTTCCCAAAGATGGAAAACAGG  727



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42146449333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5