BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg320472 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT2G26840.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 545 2e-154 > AT2G26840.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1). | chr2:11447197-11448949 REVERSE LENGTH=1208 Length=1208 Score = 545 bits (295), Expect = 2e-154 Identities = 322/335 (96%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 531 GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 GGGTTGGTATAGTGGAGGATTTGGATATGGATTATGGATAGGAACACTTGTTGCTTCAGG 785 Query 591 CTTTTGTGTCATTCCAGTTTCTGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG 650 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 786 CTTTTGTGTTATTCCGGTTTCCGCATCTTTATGGAAGAGGCATTTTCAACTTGCTAGTGG 845 Query 651 GAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC 710 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 AAGTTGCACAAAGGACGATAGCAGACGAGTTGCAGCGGAGTTGTTTCCATCGCTTAGTTC 905 Query 711 GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 GCAACTTAAGAGGAAAAAGGATCATGGTCGAGCTGAAGCACTGCTCATTGCGGCGTATGG 965 Query 771 TGAAGCCCTTAAAACAGAGAAGTTGTTGATCCAGCCACAAG-AATTGGTTTCTCAGGTTA 829 ||||||||||||||||||||| ||||||||||||||| ||| |||| | ||||| |||| Sbjct 966 TGAAGCCCTTAAAACAGAGAAATTGTTGATCCAGCCA-AAGGAATTACTCTCTCAAGTTA 1024 Query 830 ACTACGTAGAAAACCAGTTAGTGGAGATTAAATAG 864 ||||| |||||||||||||||||||| |||||||| Sbjct 1025 ACTACTTAGAAAACCAGTTAGTGGAGGTTAAATAG 1059 Score = 457 bits (247), Expect = 1e-127 Identities = 308/336 (92%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 1 ATGGCAACAACGGCGTACGGCCAACCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG 60 |||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 79 ATGGCAACGACAGTGTACGGCCAAGCGTCGCTGCCACAGATGCATAGTCTTTTCTCAAAG 138 Query 61 CTCAGACCTTTCCTTTCTCTCTC-CTCGCCGTCTTTTACAGCCCCGTTC-CGGCGGCGAC 118 |||| || | |||||||||| |||||||||||| ||||| |||||| | || || | Sbjct 139 GTCAGGCC--T--TTTCTCTCTCACTCGCCGTCTTTCACAGCTCCGTTCAC-TCGTCGGC 193 Query 119 GGGA-TTTCTCGTTTAGTGCTCTTCCAACGACGAAAGCTATTGACGCGGCGTTAATGAAG 177 ||| |||| |||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 194 -GGAGTTTCCCGTTTAGTGCTCTTCCTACGACGAAAGCCATAGACGCGGCGTTAATGAAG 252 Query 178 GAGAAATGGTTGGATtctctctctctcACCTCACAAGACGAAGATACGACTCCGGAGAAT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 GAGAAATGGTTGGATTCTCTCTCTCTCACCTCACAAGACGAAGATACGACTCCGGAGAAT 312 Query 238 GCTGAGTCAAACTGCATCATTGGGGTTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG 297 |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 313 GCTGAGTCAAGCTGTATCATTGGGATTGACCCTGATTTGTCTGGTGCGTTGGCTCTTTTG 372 Query 298 AAATTTGACCACTTGGGTTCTTCTTCTTCTGCTCAG 333 |||||||||||||||||||||||||||| ||||||| Sbjct 373 AAATTTGACCACTTGGGTTCTTCTTCTTTTGCTCAG 408 Score = 252 bits (136), Expect = 5e-66 Identities = 152/160 (95%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 334 GTTTATGATACACCTCACATCCCAGTTTTAGTTGGGAAAAGAGTGAGAAAACGTTTGGAT 393 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 568 GTTTATGATACACCTCACATTCCAGTTTTAGTTGGGAAAAGAGTAAGAAAACGTTTGGAT 627 Query 394 GCAAAGTCAATTGTTCAATTGATTCAGAGTTTAGATGTTCCTTCTGGAAGCAGAGTATAT 453 |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| ||| Sbjct 628 GCAAAGTCAATTGTACAATTGATTCAGAGCTTAGATGTTCCCTCAGGAAGCAGAGTGTAT 687 Query 454 ATAGAACAATCGAATCCGTTTCCAAAAGATGGAAAACAGG 493 ||||||||||||||||||||||| |||||||||||||||| Sbjct 688 ATAGAACAATCGAATCCGTTTCCCAAAGATGGAAAACAGG 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5