BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320480
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26950.1 | Symbols: AtMYB104, MYB104 | myb domain protein 10... 630 6e-180
> AT2G26950.1 | Symbols: AtMYB104, MYB104 | myb domain protein
104 | chr2:11500721-11502136 REVERSE LENGTH=1212
Length=1212
Score = 630 bits (341), Expect = 6e-180
Identities = 605/725 (83%), Gaps = 47/725 (6%)
Strand=Plus/Plus
Query 294 ATTGAAACGACTTGGTTTACCAGTTTACCCTGATAAAGTTCGAAAGCAGGCGATAAGTAC 353
||||||| || ||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 417 ATTGAAAGGAAAGGGTTTACCAGTTTACCCTGATGAAGTTCGAGAGCAGGCGATACGTAC 476
Query 354 AGCATTACGAA-ATGGTCT-AAAGATTGATTTATTGGATG--C-------TCAAGACTTG 402
|||| || || ||||| | |||| |||| |||||| ||| | ||||||||
Sbjct 477 AGCAGCAC-AATATGGTGTAAAAG-TTGAATTATTGAATGCTCATTATAGTCAAGACTCA 534
Query 403 TTGATGGTAGATAACGTCGAGAAACCTGACGCGGCACTCAATAACTTGCCACTCAATCAA 462
||||||| || || |||||||||||| | | ||||||||||||| |||||||||||
Sbjct 535 TTGATGGCAGGCAATGTCGAGAAACCT--C-AAGAACTCAATAACTTGGCACTCAATCAA 591
Query 463 TTTTCTTCATACTACCAGTCAATGCTTGCCAATGTTCAGCCT-------A----G----G 507
| |||| | || |||||||||| ||||||||||||||||||| | | |
Sbjct 592 TGTTCTCCGTATTACCAGTCAACGCTTGCCAATGTTCAGCCTAGCCGCAATCGCGTTATG 651
Query 508 GAACCAGAAACCACATTTCCTTTCACAAATGGGTATGTCATGAACGAGCAAAACCCTAAC 567
||||||||||| |||||||||||||| ||| | || ||||||||||||||||||| ||
Sbjct 652 GAACCAGAAACAACATTTCCTTTCACGGGTGGATCTGCCATGAACGAGCAAAACCCT-AC 710
Query 568 -CTCTTGAATTATCTTTCCGTGGATAGCACTCAAGAACAATTACCTGACATCCATTTGTT 626
|||||| | ||| || |||||| |||||||||||||| |||||||||| |||||||||
Sbjct 711 TCTCTTGTGTAATCCTTACGTGGAGAGCACTCAAGAACAGTTACCTGACAGCCATTTGTT 770
Query 627 TGGCAATGCTACATGTTCTTCTCCTCCTATGCCTCTCATTCACGGGGTTGGGAACTTGGA 686
||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 771 TGGAAATGTTACATATTCTTCTCCTCCTATGCCTCTCATTCACGAGGTTGAGAACTTGGA 830
Query 687 GCTCCCTTCATTCCAAGGATTTAATGCTCATGAAGTGCCTAGCAGTTTTGGAGCAGAACA 746
|||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||
Sbjct 831 GCTCCCTTCATTCCAAGGCTTTGATTTTCATGAAGAGCCTAGCAGTTTTGGAGCAGAACA 890
Query 747 ATATAACCCAATGATGAATCTTGAGCCAGACAACACTTTGGTTCAGCCCCCTTTGATAGG 806
||||||||||||| |||||||||||||| ||||||||||||| ||| | ||| |||||||
Sbjct 891 ATATAACCCAATGCTGAATCTTGAGCCACACAACACTTTGGTCCAGTCTCCTCTGATAGG 950
Query 807 CCAAACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGA--A-T------- 856
||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 951 CCAGACACCAACAGATTTCCCATCATCATTCTATGATGAATTGTTGGATGAATTGTTGGA 1010
Query 857 --CAGTTGTTTATGGTTCAGTAGGAGAAAGACCGAAAACCGATACCAGCTCGGAGCTCCC 914
|||||||| | |||||| ||||||||| |||||||||||||||||| |||||| ||||
Sbjct 1011 ATCAGTTGTTAACGGTTCATTAGGAGAAATACCGAAAACCGATACCAGTTCGGAG-TCCC 1069
Query 915 ACCT-TTTCCGTCCTCCCTACTTAGCCATACCGAGGTTACACCACCCATTGCAAACACAA 973
| || |||| |||||| |||| |||||||||||| | ||||||| ||||||||||||||
Sbjct 1070 AACTGTTTCAGTCCTCTCTACGTAGCCATACCGATGCTACACCAGACATTGCAAACACAA 1129
Query 974 TTGGT 978
||||
Sbjct 1130 CTGGT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5