BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320487

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36280.1 | Symbols:  | L-Aspartase-like family protein | chr...   300    6e-81
  AT4G18440.1 | Symbols:  | L-Aspartase-like family protein | chr...   259    1e-68


> AT1G36280.1 | Symbols:  | L-Aspartase-like family protein | chr1:13640508-13643017 
FORWARD LENGTH=1785
Length=1785

 Score =  300 bits (162),  Expect = 6e-81
 Identities = 212/235 (90%), Gaps = 8/235 (3%)
 Strand=Plus/Plus

Query  1    ATGGTTTGTGCAAGTTCCAGAGAGTTGGAGATGTCAAATTTAACAGCATTATCGCCTTTG  60
            |||| | |||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct  261  ATGGCTAGTGCAAGTTCCAGAGACTTTGAGATGTCGAATTTAACAGCATTATCGCCTTTG  320

Query  61   GATGGACGTTTTTGGAGGAAAT-TTAAGGAATTGGCTTCTTCTATGAGCGAGTTTAGG-T  118
            |||||||||| |||| |||||  ||||||| |||||||||||||||||||||||| || |
Sbjct  321  GATGGACGTTATTGG-GGAAAAGTTAAGGACTTGGCTTCTTCTATGAGCGAGTTT-GGAT  378

Query  119  TGATCTATTTCCGAGCACTTGGT-GAGATCAAATGGCTTCCTAAGCTTTCAAATACACTC  177
            ||||||||||||||| ||||| | |||||||||||||||  |||||||||||||| || |
Sbjct  379  TGATCTATTTCCGAGTACTTG-TCGAGATCAAATGGCTTATTAAGCTTTCAAATATAC-C  436

Query  178  TCAAAGTCACTGAAGTTCCAAGCTTTAGCAAAGAAGCTCAGATTTACTTGCAAGG  232
            |||| ||||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct  437  TCAA-GTCACTGAAGTTCCAAGCTTTAGCAAAGAAGCTCATAAGTACTTGCAAGG  490


> AT4G18440.1 | Symbols:  | L-Aspartase-like family protein | chr4:10186131-10188909 
REVERSE LENGTH=1942
Length=1942

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 194/219 (89%), Gaps = 8/219 (4%)
 Strand=Plus/Plus

Query  19   AGAGAGTTGGAGATGTCAAATTTAACAGCATTATCGCCTTTGGATGGACGTTTTTGGAGG  78
            ||||| ||||||||||| |||||||| || |||||||||||||||||||||| |||||| 
Sbjct  291  AGAGACTTGGAGATGTCGAATTTAACGGCGTTATCGCCTTTGGATGGACGTTATTGGAGT  350

Query  79   AAATTTAAGGAATTGGCTTCTTCTATGAGCGAGTTTAGG-TTGATCTATTTCCGAGCACT  137
            ||| ||||||| |||||||||||| ||||||||||| || ||||||||||||||||   |
Sbjct  351  AAAGTTAAGGACTTGGCTTCTTCTTTGAGCGAGTTT-GGATTGATCTATTTCCGAG-TTT  408

Query  138  TGGT-GAGATCAAATGGCTTCCTAAGCTTTCAAATACACTCTCAAAGTCACTGAAGTTCC  196
            | || |||||||||||||||| ||||||||| ||||  | ||  ||||||||||||||||
Sbjct  409  TTGTCGAGATCAAATGGCTTCTTAAGCTTTCGAATATTC-CT-GAAGTCACTGAAGTTCC  466

Query  197  AAGCTTTAGCAAAGAAGCTCAGA-TTTACTTGCAAGGCA  234
            ||||||||||||||||||||||| ||| |||||||||||
Sbjct  467  AAGCTTTAGCAAAGAAGCTCAGAGTTT-CTTGCAAGGCA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5