BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320520

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27270.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   475    2e-133


> AT2G27270.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Late embryogenesis abundant (LEA) hydroxyproline-rich 
glycoprotein family (TAIR:AT4G01410.1); Has 250 Blast hits 
to 250 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:11672271-11673208 FORWARD 
LENGTH=845
Length=845

 Score =  475 bits (257),  Expect = 2e-133
 Identities = 388/449 (86%), Gaps = 18/449 (4%)
 Strand=Plus/Plus

Query  146  TTCCACAGTTCATGCTCGAGGATCTCTACGTTGAT--CCTCACAGTC-CAAGTGTATTTG  202
            |||||| ||||||||||||||||||||||||||||  |||| ||  | |||||||| |||
Sbjct  329  TTCCACGGTTCATGCTCGAGGATCTCTACGTTGATCCCCTCTCAAACACAAGTGTAATTG  388

Query  203  TTAATCTGTCATCTACCAACCCAAGCTCCAAGTCAAGTGTTTACTACAGCAAACTGAGTC  262
            | || |||||||| ||||||||||||| ||||||||||||||||||||| ||| | ||||
Sbjct  389  TGAAACTGTCATCGACCAACCCAAGCTACAAGTCAAGTGTTTACTACAGAAAAATAAGTC  448

Query  263  TACACGTCCTAGTCCCAGGAGACTTCGAGACAGAGACTGTTTTCTTGCAAAGCAAGCGGC  322
            ||||||||||||||  || | | ||||||||||||| |||||| |||||||||| ||| |
Sbjct  449  TACACGTCCTAGTCGGAGAAAAATTCGAGACAGAGAGTGTTTTTTTGCAAAGCAGGCGTC  508

Query  323  AGAAGCCTCGTGA-AGTTACGAC-TTGGACAGCGGTTGTAGCAAACAATAACGACAATC-  379
            || |||||||| | ||||| | | ||||||||||||  ||||||||||||||||||| | 
Sbjct  509  AGGAGCCTCGT-ACAGTTA-GGCTTTGGACAGCGGTCATAGCAAACAATAACGACAA-CG  565

Query  380  TTAAGCGGACCTGGGATTTTCTTGTCAGCCACGGTATTG-CCGACGGTTACGTTATAGCC  438
             ||||| |||| ||| ||||||||| || ||||||| ||  | ||||| |||||||||||
Sbjct  566  GTAAGCCGACCGGGGCTTTTCTTGTGAGACACGGTA-TGTACTACGGTCACGTTATAGCC  624

Query  439  GATATAAAGTTCCAATGGAAGAGTGGGATCTTCTCGTTCAGAA-AGTTTGGTTTGCACGT  497
            ||||||  |||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct  625  GATATAGTGTTCCAATGGAAGAGTGGGATCTTCTCGTTCA-AAGAGTTCGGTTTGCACGT  683

Query  498  AAGATGTCCGGTTTTGCTCATATTGGACGATTTAAGCTCCACAAG---CAGAGCAGTGTT  554
            ||||||||||||| |||||| |||||| |||||||||||| |||    |||||||| || 
Sbjct  684  AAGATGTCCGGTTCTGCTCAGATTGGAAGATTTAAGCTCCGCAACTATCAGAGCAGGGT-  742

Query  555  CC-CTTGTTCTCAACACTTCCATCTTTAA  582
            || ||||||||||||||||||||||||||
Sbjct  743  CCACTTGTTCTCAACACTTCCATCTTTAA  771



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5