BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320535
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27520.1 | Symbols: | F-box and associated interaction doma... 518 5e-146
> AT2G27520.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:11762061-11763104 FORWARD LENGTH=1044
Length=1044
Score = 518 bits (280), Expect = 5e-146
Identities = 510/612 (83%), Gaps = 51/612 (8%)
Strand=Plus/Plus
Query 252 CCAACAA-GTCGAAATAACGCAAGTTTTTCACTGCAATGGCTTATTGTTATGTTCCACGA 310
||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 224 CCAACAACATTGAAATAGCGCAAGTTTTTCATTGCAACGGCTTATTGTTATGTTCCACGG 283
Query 311 AAGAGGCCGACAAGACTAAACTCGTTGTTGTGAATCCGTGTACTGGTCAAACCAGGTGGA 370
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 284 AAGAGGGTAACAAGACTAAACTCGTGGTTGTGAATCCGTGTACTGGTCAGACCAGGTGGA 343
Query 371 TCGAACCAAGAAGTGATTGCAATATATATGAT-ATG-TAT-ACTCTAGGTTACGAAAACA 427
|||||||||||| ||||| |||| |||| || ||| ||| |||||||||||| |||||
Sbjct 344 TCGAACCAAGAACTGATTACAAT-TATA--ATCATGATATCGCTCTAGGTTACGGAAACA 400
Query 428 ACA--A-CAAGAAATCGTATGATAGCTACAAAATCTTGAGGATTTCGTATGGTTGCAATC 484
||| | |||||||||||| || ||||||||||||||||||||| ||||||||||||| |
Sbjct 401 ACAGCACCAAGAAATCGTACGACAGCTACAAAATCTTGAGGATTACGTATGGTTGCAAAC 460
Query 485 TC-TTGGAAATCTTTGAGCTAAAGTCTAATTCATGGAGGGTTCTTCCTCAAGTCCCTCCC 543
|| || ||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 461 TCGTT-GAAATCTTTGAGCTAAAGTCTAATTCATGGAGGGTTCTTTCTAAAGTCCATCCC 519
Query 544 AACATGGGTCTGGATCTACGTCTGTATGGAAGAGGCGAGTCTTTGAAGGGAAATACCTAC 603
||| ||| | | || | | |||||| | | || |||||| |||||||||||||||
Sbjct 520 AACGTGGAAAA--A-C-AC-TAT-TATGGA-G-G-CGTGTCTTTCAAGGGAAATACCTAC 570
Query 604 TGGTTTT-GCTATTTTAAATTCGGTATGTTGAGTTTTGATTTCACAACAGAGACACTTAG 662
||| ||| | ||| |||||| ||| ||||||||||||||||||||||||||| ||||
Sbjct 571 TGGCTTTCG-TATACGAAATTCAATATATTGAGTTTTGATTTCACAACAGAGACATTTAG 629
Query 663 ACGTGTGCCTCTTCCATTTCCGTATG-GGCATCGTGATTTATGT-ACTTT-GTCTCTATC 719
| ||||||||||||| |||| |||| || || | | ||| || ||||| | |||||||
Sbjct 630 AAGTGTGCCTCTTCCGTTTCTGTATCAGG-AT-G-G-TTTC-GTTACTTTAG-CTCTATC 683
Query 720 AGTTGTTAAAGAAGAACAACTTTCGGT-GTTACGTTCGAG-TCATGATACGCGACAGATG 777
|||||||| |||||| |||||| | || |||||||||||| | ||||| | ||||| |
Sbjct 684 AGTTGTTAGAGAAGAGCAACTT-CTGTTGTTACGTTCGAGGTT-TGATATGGGACAG--G 739
Query 778 GAGATATGGATGGAGATATGGATGAGTACTAAGATTGATACTGAAACT-T-TT-TCGTGG 834
| ||| | | |||||||| ||| ||||||||||||||||||| | || ||||||
Sbjct 740 ----T-TGG--G-A--TATGGATGTGTAATAAGATTGATACTGAAACTGTGTTGTCGTGG 789
Query 835 AGCAAATCCTTT 846
||||||||||||
Sbjct 790 AGCAAATCCTTT 801
Score = 309 bits (167), Expect = 3e-83
Identities = 201/217 (93%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 1 ATGGGATTT-GTAGATGAAATACTCTCTCGACTTCCGGCAACATTTCTTGGCCGACTACG 59
||||||||| |||||||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 21 ATGGGATTTGGTAGATGAAATACTCTCTCGACTTCCCGCAACATCTCTAGGTCGACTACG 80
Query 60 ATTTACATGCAAACGATGGAATGCTTTACTCAAAGATTCGAAATTCATCACAAAGCAATT 119
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 81 ATTTACATGCAAACGATGGAATGCTTTATTCAAAGATCCGGAATTCATCACAAAGCAATT 140
Query 120 GGATAAAGCAGCAAAGCA-GAATTTGGTTCTCATGTTGAGTAATTTTAGGGTTTACTCGA 178
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 141 TCATAAAGCAGCAAAGCAAGA-TTTGGTTCTCATGTTGAGTAATTTTGGGGTTTACTCGA 199
Query 179 TGAGTATCAATCTCAAAGAAATTCATAACAACATTGA 215
|||||| ||||||||||||||||| |||||||||||
Sbjct 200 TGAGTACCAATCTCAAAGAAATTCCCAACAACATTGA 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5