BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320539
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27480.1 | Symbols: | Calcium-binding EF-hand family protei... 881 0.0
> AT2G27480.1 | Symbols: | Calcium-binding EF-hand family protein
| chr2:11746720-11748051 FORWARD LENGTH=944
Length=944
Score = 881 bits (477), Expect = 0.0
Identities = 618/688 (90%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCCTCAAACGCCTACGCGCCGTCAGCACCGGAGTTGCCAGAATCGTTCGGTCAG 60
||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||
Sbjct 92 ATGTCTTACTCAAACGCCTACGCACCGTCGGCACCGGAGCTACCAGAATCGTTCGTTCAG 151
Query 61 CAGCAGTACGACGGCGAAAACAGATACAGTTACGCGTATCCATCATATCAACAAACTCAA 120
|||||| |||| || |||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 152 CAGCAGCACGATGGTGAAAGTAGATACACTTACGCGTATCCATCATATCAACCAACTCAG 211
Query 121 CAATTAACCTCCTCCTCCGGGATGTTTTCACCGGAAACGCATCCGCAGATTGTGAGGAGC 180
||||| | ||| | ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 212 CAATTCAGCTCTTACTCCGGGATGTTTTCCCCGGAAACGCATCCGGAGATTGTGAGGAGC 271
Query 181 TTTGACTCGGCGGATAGAGATCGGAGCGGATTTCTCGAAGAGTCGGAGCTCCAGCAAGCG 240
||||| |||||||||||| | |||||||||||||||||||| |||||||||| |||||||
Sbjct 272 TTTGAGTCGGCGGATAGAAACCGGAGCGGATTTCTCGAAGAATCGGAGCTCCGGCAAGCG 331
Query 241 TTGTCGTTATCTGGTTACGAAGGAATTAGTAACAGAACGATTAGGTTTTTGTTGTTTATT 300
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 332 TTGTCGTTATCTGGGTACGATGGAATTAGTAACAGAACGATTAGGTTGCTGTTGTTTATT 391
Query 301 TACAAGAGTCCTGGAGATTCTCTGCTACGTCTTGGTCCCAAGGAGTATGTTGAGTTGTGG 360
||||||| ||||| |||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 392 TACAAGATTCCTGTAGATTCTCTGCTTCGGCTTGGTCCTAAGGAGTATGTTGAGTTATGG 451
Query 361 AATTGTCTTGCGCAATGGCGTGCAATATTTGATAGGTATGATAGAGATAGGAGCGGAAAG 420
|| || |||||||||||||||||||||||| | ||||| |||||||||||||| ||||||
Sbjct 452 AACTGCCTTGCGCAATGGCGTGCAATATTTAACAGGTACGATAGAGATAGGAGTGGAAAG 511
Query 421 ATCAATGCTACCGAGCTCAGAGACGCTTTCTTTCATCT-GGGATACATGCTTCCAACCTC 479
|| ||| ||||| |||||||||||||||||| | |||| ||| | | |||||||||||||
Sbjct 512 ATGAATTCTACCCAGCTCAGAGACGCTTTCTATAATCTCGGG-TGCGTGCTTCCAACCTC 570
Query 480 GGTTCTTCAACTTATCGTATCTCAGTTTGATGATGGGACTGGTAAAGCTGTTGACCTCTG 539
||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 571 GGTTCACCAGCTTATCGTATCTCAGTTTGATGATGGGACTGGCAAAACTGTTGACCTATG 630
Query 540 TTTCGATAGTTTCCTTGAATGTGGGATGATTGTGAAGGGATTGACTGAGAAGTTCAAAGA 599
|||||| || ||||| || |||||||||||||||||||||||||| |||||||||| ||
Sbjct 631 TTTCGACAGCTTCCTCGAGTGTGGGATGATTGTGAAGGGATTGACAGAGAAGTTCAGGGA 690
Query 600 GAATGACCCTGGTTACACAGGCTACGCAACGCTCCCTTACGATGTTTTCATGTTGATGGT 659
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 691 GAACGACCCTGGTTACACAGGCTACGCAACGCTCTCTTACGATGTCTTCATGTTGATGGT 750
Query 660 CATTCCGTTCGTCGTCTCCTATGATTAA 687
|||||||||| ||| | |||||||||||
Sbjct 751 CATTCCGTTCATCGCCACCTATGATTAA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5