BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320542
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6... 580 6e-165
AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 540 1e-152
AT2G04150.1 | Symbols: | pseudogene of F-box family protein | ... 278 9e-74
> AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500
FORWARD LENGTH=1371
Length=1371
Score = 580 bits (314), Expect = 6e-165
Identities = 624/770 (81%), Gaps = 35/770 (5%)
Strand=Plus/Plus
Query 33 CCTGAAGAAGTTGTACTT-ATGTAATTGTAATATCTCTGATGAATCCATGGCTAAGATTC 91
|||||||||||||||||| | ||| |||| | |||||||||||||||||||||| ||||
Sbjct 507 CCTGAAGAAGTTGTACTTGA-GTACTTGTCTTCTCTCTGATGAATCCATGGCTAACATTC 565
Query 92 TATCTGGTAGTCCCCTTCTCGAAAGCTTAAC-TTTGTATTTCTGCGATCAACTAAGGGTT 150
||| |||| |||| ||||||| |||||||| | | || ||||| | ||||||||||
Sbjct 566 TATTTGGTTGTCCAATTCTCGAGAGCTTAACACTAG-ATCACTGCGGTGGACTAAGGGTT 624
Query 151 CTGGATCTCAGCAAATCACTGCGTTTGAGAACGTTGA-AAATAAACCGCAACATTTGGGT 209
|| |||||||||||||||||||| ||||||| || | |||||||| | |||||||||||
Sbjct 625 CTTGATCTCAGCAAATCACTGCGCCTGAGAACATT-AGAAATAAACTGTAACATTTGGGT 683
Query 210 TCTGGGGCCAAC-GC-AT----ATTGTGGCACCACATATCCATCGTCTCAGATTGACAAA 263
|| | || ||| || || |||||||| ||||||| |||| |||||||||||| |||
Sbjct 684 TCCCGAGCTAACGGCAATGCAGATTGTGGCTCCACATACCCATTGTCTCAGATTGAGAAA 743
Query 264 CTCTCAGTTACCATGTACTTTTGTTAATCTCTCGT--CTTTAGCCGAAGCTAGACTGGAC 321
|||| | |||||||||| | ||||| || |||| | || || ||||||| ||| ||
Sbjct 744 CTCTAAATTACCATGTAGTCTTGTTGATGTCTCATCACTGAAG--GAAGCTAAACTTAAC 801
Query 322 ATTTGCATTGTCCCAATAACCGGAATCTTCGAGGCTGATTTTCTTCAAGACATGGTGCTA 381
|||||||||| | || | | || | || ||||||| |||||||||| || | || ||
Sbjct 802 ATTTGCATTGACTCATTTTCTAAAACCATCAAGGCTGACTTTCTTCAAGTCACGCTGTTA 861
Query 382 AAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTACTTTTGAG-GGAAACTTTCTTCA 440
|||||||| ||||||||||| || || ||||||||||| |||| | ||||||||||||||
Sbjct 862 AAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTAC-TTTGGGTGGAAACTTTCTTCA 920
Query 441 AATTATATCTC-TTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTCAAGGTGAAAGATT 499
||| |||| | |||||||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct 921 GATTTTATC-CGTTGCCGAGCTTCGTGGTGTCCCTTTCCCGATGTTCAAGGTGAAAGATT 979
Query 500 TGACGCTGGAAACAGTGATATTTCAGTATGTTATTCCTGGTATAGAAAGACTGTTACAAA 559
|||| || || ||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 980 TGACTCTCGAGACAGTCATCTTTCAGTATGTTATTCCTGGTATAGAAAGAGTGTTACAAA 1039
Query 560 ACTCACCTGATTTAAAGAAGCTAACTAT-ACGCGCAAGGGATACCAACACCATA--C-GG 615
||||||||||||||||||||||||| || || | ||| |||| | || | ||| | ||
Sbjct 1040 ACTCACCTGATTTAAAGAAGCTAAC-ATTACTCACAAAGGATTTCTAC-C-ATAAACCGG 1096
Query 616 GAGAAGGATATAAACAACTACTTGCAGTTGCAAGGCTTAAACC-CAGATCAATGTTGGAG 674
| || | || | | || || || | ||| ||||||| || | | |||||||||||||
Sbjct 1097 GTGA-GTATCTTGGCGACCACATGGATTTGGAAGGCTTTAATCTC-GATCAATGTTGGAA 1154
Query 675 ATCAAAAGATGGGGTCTTTTTCAACAATTTACCTT-GGTATTTAGAGTCAAAGCACGC-G 732
||||||| |||| ||||||| ||||| | | || || || |||||||| |||||| |
Sbjct 1155 ATCAAAATATGGTGTCTTTTGGAACAAGTCATGTTTGG-ATGTAGAGTCAGAGCACGTTG 1213
Query 733 ACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGACATTAGACATAGA 782
|||||| ||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1214 T-TTCATTCGTGGAACTTATGCTTAAAAACACAAAGGCATTAGACA-AGA 1261
> AT1G60180.1 | Symbols: | pseudogene of F-box family protein
| chr1:22195525-22196685 REVERSE LENGTH=891
Length=891
Score = 540 bits (292), Expect = 1e-152
Identities = 632/791 (80%), Gaps = 44/791 (6%)
Strand=Plus/Plus
Query 12 ATGCTCCTTGTCTTGGACATCCCTGAAGAAGTTGTACTTATGTAATTGTAATATCTCTGA 71
||| ||| | |||||||| |||||||||||||||| | | || |||| | |||||||
Sbjct 12 ATGTTCCGTATCTTGGACGTCCCTGAAGAAGTTGTCCCTGCGTTTTTGTGAGCTCTCTGA 71
Query 72 TGAATCCATGGCTAAGATTCTATCTGGTAGTCCCCTTCTCGAAAGCTTAACTTTGTATTT 131
||||| || || ||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 72 TGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAACATTGTCCCA 131
Query 132 CTGCGATC-AACTAAGGGTTCTGGATCTCAGCAAATCACTGCGTTTGAGAACGTTGA-AA 189
|||| ||| | || | |||||| ||||| |||||||| ||||| |||||||| || | ||
Sbjct 132 CTGC-ATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATT-AGAA 189
Query 190 ATAAACC-GCAACATTTG--GGTTCTGGGGCCAACGCATATTGTGGCACCACATATCCAT 246
|| | || |||||| ||| | | | |||||| ||| ||||||||||| |||||||||
Sbjct 190 AT-AGCCTGCAACA-TTGACAATAC-GAGGCCAAGGCAGATTGTGGCACCGCATATCCAT 246
Query 247 CGTCTCAGATTGACAAA-CTCTCAGTTACCATGTACTTTTGTTAATCTCTCGTCTTTAGC 305
||||||||| ||| ||| || ||||| ||||||| |||| ||| || ||||||||||||
Sbjct 247 CGTCTCAGACTGA-AAACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA 305
Query 306 CGAAGCT-AGACTGGACAT-TTGCA-TT-GTCCCA-ATAACCGGAATCTTCGAGGCTGAT 360
|||||| | | ||||| | || || || || || ||| | | | |||| ||| ||
Sbjct 306 TGAAGCTCA-AGTGGAC-TGTTTCATTTACTCACATCTAA--AG-ACCCTCGACGCTTAT 360
Query 361 TTTCTTCAAGACATGGTGC-TAAAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTAC 419
|| ||||||||||| | | |||| ||| |||| ||||||||||||| |||||||||||
Sbjct 361 TTACTTCAAGACAT--T-CTTAAA-ATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTAT 416
Query 420 TTTTGAGG-GAAACTTTCTTCAAATTATATCTCTTGCCGAGGTTCGTGGTGTTCCTTTTC 478
||||| || | ||| ||||||| ||| ||||||||||||||||| | ||| ||||||| |
Sbjct 417 TTTTG-GGTGCAACATTCTTCAGATTTTATCTCTTGCCGAGGTTTGCGGTCTTCCTTTCC 475
Query 479 CGATGTTCAAGGTGAAAGATTTGACGCTGGAAACAG-TGATATTTCAGTATGTTATTCCT 537
||||||||||| |||| |||||| || || |||| | || ||||||||||||||||||
Sbjct 476 CGATGTTCAAGACAAAAGCTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCT 534
Query 538 GGTATAGAAAGACTGTTACAAAACTCACCTGATTTAAAGAAGCTAACTA-TACG-CGCAA 595
|||||||||||||| ||||||||||||||||||||||||| | | || | | || | |||
Sbjct 535 GGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGACGGTGAC-AGTTCGTC-CAA 592
Query 596 GGGATACCAACACCATACGGGAGAAGGA-TATAAACAACTACTTGCAGTTGCAAGGCTTA 654
| ||| ||||| ||| | || | ||| | | ||||||||||| | |||||||||||
Sbjct 593 GTGATGGCAACATCATGCCGG-GTAGGTGTTTTGACAACTACTTGGACTTGCAAGGCTTG 651
Query 655 AACCCAGA-TCAATGTTGGAGATCAAAAGATGGGGTCTTTTTCAACAATTTACC-TTGGT 712
|| || || |||||||||||||||||||||||||||||||| || || | || || |
Sbjct 652 AATCC-GAATCAATGTTGGAGATCAAAAGATGGGGTCTTTTGGAATAAATC-CCGTTCGA 709
Query 713 ATTTAGAGTCAAAGC-ACGCGACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGACA 771
|||||| ||||||| | | ||||| ||| ||||||||| |||||||||||||||||| |
Sbjct 710 ATTTAGGGTCAAAGAGA-GTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGATA 768
Query 772 TTAGACATAGA 782
||||||| |||
Sbjct 769 TTAGACA-AGA 778
> AT2G04150.1 | Symbols: | pseudogene of F-box family protein
| chr2:1400044-1401282 FORWARD LENGTH=1239
Length=1239
Score = 278 bits (150), Expect = 9e-74
Identities = 354/449 (79%), Gaps = 28/449 (6%)
Strand=Plus/Plus
Query 1 ATGGTTCC-CGCATGCTCCTTGTCTTGGACATCCCTGAAGAAGTTGTACTTATG-TAATT 58
|||||||| | | |||| ||||||||||||| ||| |||||||||||| | || ||
Sbjct 87 ATGGTTCCTAG-AGGCTCAGTGTCTTGGACATCTCTGCGGAAGTTGTACTT-GGATAGTT 144
Query 59 GTAATATCTCTGATGAATCCATGGCTAAGATTCTATCTGGTAGTCCCCTTCTCGA-AAGC 117
|| | | |||||||||||||||||||||||||||||||| ||||| |||| || |||
Sbjct 145 CTAGTCTTTCTGATGAATCCATGGCTAAGATTCTATCTGGCAGTCCGATTCTTGAGAAG- 203
Query 118 TTAACTTTGTATTTCTGCGAT-CAACT-AAGGGTTCTGGATCTCAGCAAATCACTGCGTT 175
|||| |||| || |||| | || || ||| |||| ||||||||||||||| |||||
Sbjct 204 TTAAAGTTGTGTTCCTGCAAGGCA-CTCAAGA-TTCTTGATCTCAGCAAATCAATGCGTC 261
Query 176 TGAGAACGTT-GAAAATAAACCGCAACATTTGGGTTCTGGGGCCAACGC-ATATTGTGGC 233
||||||| || |||| ||||| || ||| | || | | ||| | | ||||| ||
Sbjct 262 TGAGAACATTAGAAA-TAAACTGCGACACTAAGGA---G---C-AACTCCAGATTGTTGC 313
Query 234 ACCACATATCCATCGTCTCAGATTGACAAACTCTCAGTTACCATGTACTTTT-GTTAATC 292
|||| |||||||| |||||| ||||| ||| ||||| |||||||||| |||| || ||
Sbjct 314 ACCATATATCCATTGTCTCATATTGAGAAAATCTCATTTACCATGTA-TTTTAGTCGATG 372
Query 293 TCTCGTCTTTAGCCGAAGCTAGACTGGACATTTGCATTGTCCCAATAACCGGAATCT-TC 351
|||||||||||| |||||||||| || |||| |||| || | || | | || | ||
Sbjct 373 TCTCGTCTTTAGTCGAAGCTAGATTGAACATCTGCACTGGCTCACTTTCAAAAA-CAATC 431
Query 352 GAGGCTGATTTTCTTCAAGACATGGTGCTAAAGATGTTAGAAAAGTTGCAGAATGTAGAG 411
|||| ||||| |||||||| |||||| ||||||||||||||||||||||| || || |||
Sbjct 432 GAGGTTGATTCTCTTCAAGTCATGGTTCTAAAGATGTTAGAAAAGTTGCACAACGTGGAG 491
Query 412 AAGCTTACTTTTGAGGG-AAACTTT-CTT 438
||||||||||||| ||| ||| ||| |||
Sbjct 492 AAGCTTACTTTTG-GGGTAAA-TTTGCTT 518
Score = 145 bits (78), Expect = 9e-34
Identities = 124/145 (86%), Gaps = 7/145 (5%)
Strand=Plus/Plus
Query 446 TATCT-CTTGCCGAGGTTCGTGGTGTTCCTTTTCCGATGTTCAAGGTGAAAG-ATTTGAC 503
||||| | || |||| ||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 649 TATCTAC-TGACGAGCTTCGTGGTGTTCCTTTTCCGATGTTTAAGGT-TAAGTCTTTGAC 706
Query 504 GCTGGAAAC-AGTGATATTTCAGTATGTTATTCCTGGTATAGAAAGACTGTTACAAAACT 562
|| || || || | | | | ||||||||||| |||||||||||||| ||||||||||||
Sbjct 707 TCTTGACACAAG-GGTCTCTAAGTATGTTATTTCTGGTATAGAAAGAGTGTTACAAAACT 765
Query 563 CACCTGATTTAAAGAAGCTAACTAT 587
||||||||||||||||||||| |||
Sbjct 766 CACCTGATTTAAAGAAGCTAA-TAT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5