BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320561
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28315.1 | Symbols: | Nucleotide/sugar transporter family p... 1724 0.0
> AT2G28315.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr2:12088877-12090701 FORWARD LENGTH=1179
Length=1179
Score = 1724 bits (933), Expect = 0.0
Identities = 997/1029 (97%), Gaps = 0/1029 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 79
Query 61 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 139
Query 121 GCAACAACACTTACAAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCAACAACACTTACTAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 199
Query 181 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGCGAACTGTTGTTCTCTTTGGCCTT 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 200 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAACTGTTGTTCTCTTTGGCCTC 259
Query 241 CTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTCAATTCCATCGGCTTC 300
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 260 CTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTTAATTCCATCGGCTTC 319
Query 301 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 320 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCCTC 379
Query 361 AACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTTTGCTACTGGTTGGGGTTGGT 420
||||||||||| |||||||||||||| ||||| || |||||||| || ||||||||||||
Sbjct 380 AACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTTTGCTGCTAGTTGGGGTTGGT 439
Query 421 ATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCTCTGTTCTCTCTCTCCTTGCC 480
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 440 ATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCTCTGTTCTATCTCTCCTTGCC 499
Query 481 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAATCCAGAAGAGACTGAACGTG 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 500 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTATCCAGAAGAGACTGAACGTG 559
Query 541 ACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAGCCGCTATACTCTTCGTCTCG 600
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 560 ACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAGCTGCTATACTCTTCGTCTCG 619
Query 601 GGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 660
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 GGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 679
Query 661 ATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 739
Query 721 TTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAGTCTTGGGACATCTCAAAACG 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 740 TTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAGTCTTGGGACATCTCAAAACG 799
Query 781 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATCCTTTCACTCCTCGTAACATC 840
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 800 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATCCCTTCACTCCTCGTAATATC 859
Query 841 GCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 900
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 860 GCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 919
Query 901 TCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTGGGAAAGATAGAGATACGACG 960
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 920 TCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTGGGAAAGATAGAGATACGACG 979
Query 961 CCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1020
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 980 CCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1039
Query 1021 CCAGTGTGA 1029
||||| |||
Sbjct 1040 CCAGTATGA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5