BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320571
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28210.1 | Symbols: ATACA2, ACA2 | alpha carbonic anhydrase ... 876 0.0
> AT2G28210.1 | Symbols: ATACA2, ACA2 | alpha carbonic anhydrase
2 | chr2:12029997-12032420 FORWARD LENGTH=736
Length=736
Score = 876 bits (474), Expect = 0.0
Identities = 561/604 (93%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 1 ATGGATGAATATGTAGAGGATGAACACGAATTCAGCTACGAATGGAACCAAGAGAACGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAATATGTAGAGGATGAACACGAATTCAGCTACGAATGGAACCAAGAGAACGGG 60
Query 61 CCAGCGAAATGGGGAAAGCTAAGACCGGAATGGAAAATGTGTGGAAAAGGAGAAATGCAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCAGCGAAATGGGGAAAGCTAAGACCGGAATGGAAAATGTGCGGAAAAGGAGAAATGCAA 120
Query 121 TCGCCTATTGATCTTATGAACAAGAGAGTTAGACTTGTTACTCATCTTAAAAAGCTTACT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGCCTATTGATCTTATGAACAAAAGAGTTAGACTTGTTACTCATCTTAAAAAGCTTACT 180
Query 181 AGAGACTACAAACCTTGTAACGCCACTCTCAAAAATAGAGGCCATGATATGATGCTGAAA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACACTACAAACCTTGTAACGCCACTCTCAAAAATAGAGGCCATGATATGATGCTGAAA 240
Query 241 TTTGGAGAAGAAGGGTCAGGAAGTATTAAAGTCAATGGAACTGAGTATAAACTCCTACAA 300
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 241 TTTGGAGAAGAAGGGTCAGGGAGTATTACGGTCAATGGAACTGAGTATAAACTCTTACAG 300
Query 301 CTTCATTGGCATTCTCCCTCGGAACATACTATCAATGGAAGAAGGTTTGCTCTCGAGCTT 360
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CTTCATTGGCATTCTCCCTCTGAACATACTATGAATGGAAGAAGGTTTGCTCTCGAGCTA 360
Query 361 CACATGGTTCACGAAAACATCAACGGGGGTTTGGCTGTAGTCACAGTGCTCTACAAAATT 420
|||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 361 CACATGGTTCACGAAAACATTAACGGAAGTTTGGCTGTAGTCACAGTCCTCTACAAAATC 420
Query 421 GGAAGACCAGACTCTTTTCTCGGATTGTTGGAACATAAAATGGCGGCGATTACAGATCAA 480
||||| ||||| ||||||||||||||| ||||| ||||| || |||| ||||||||||||
Sbjct 421 GGAAGGCCAGATTCTTTTCTCGGATTGCTGGAAAATAAATTGTCGGCAATTACAGATCAA 480
Query 481 AATGACGCCAAGAAAAATGTAG-TAATGATAGATCCAAGTAAAATTAAGATTGAGAGCAG 539
||||| || ||||| |||||| | |||| || ||||| | |||||||||| ||||||
Sbjct 481 AATGAGGCGGAGAAATATGTAGATG-TGATTGACCCAAGGGATATTAAGATTGGGAGCAG 539
Query 540 AAACTATTATAGATATATTGGATCACTTACCACTCCTCCATGTACGCAAAATGTTACATG 599
||| | ||||||||| |||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 540 AAAATTTTATAGATACATTGGATCACTTACTACTCCTCCTTGTACGCAAAATGTTATTTG 599
Query 600 GACC 603
||||
Sbjct 600 GACC 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5