BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg320572 Length=387 Score E Sequences producing significant alignments: (Bits) Value AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 569 5e-162 AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 165 3e-40 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 569 bits (308), Expect = 5e-162 Identities = 361/386 (94%), Gaps = 5/386 (1%) Strand=Plus/Plus Query 6 GGATACAAAAGTTTTAACTGCACAATACGAACCTAAAGCAGGAACGAAGAAGAACGAAAC 65 ||||||||||||| || |||| ||||||| |||||||||| |||||||||||||||||| Sbjct 69 GGATACAAAAGTTCTATCTGCGCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAA 128 Query 66 TGCTGAGAAGACTTGTTTTGAAGTCATATGGAA----TAAACCGGATAGATTGGTAATCG 121 |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 129 TGCTGAGAAGGCTTG-TTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCG 187 Query 122 TAAATGCATTTAGTTGTTCAGAAGGAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGG 181 ||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||| | Sbjct 188 TAAATGCGTTTAGTTTTTCAGAAAGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAG 247 Query 182 AGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGACAGTTGTTCCAA 241 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 248 AGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAA 307 Query 242 ATACCACCACCTCAGTGATAATTCAGGTTGTACATGTTGGTGGTTCTGTATCGTTTTTAT 301 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 308 ATACCACCACCTCAGTGATTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTAT 367 Query 302 GTTCCTTGCACCTAGGTAAACATTTACTGATGTTGTCTGAAACACATATAATCCGGTATA 361 ||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 368 GTTCCTTTCACCTTGGTAAACATTTACTAATGCTGTCTGAAACACATATAATCCGGTATA 427 Query 362 AACAATGTCTGTTTGAGTATTTATAG 387 |||||||||||||||||||||||||| Sbjct 428 AACAATGTCTGTTTGAGTATTTATAG 453 > AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062 Length=1062 Score = 165 bits (89), Expect = 3e-40 Identities = 114/126 (90%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 163 TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGT 222 ||| |||||||||||| ||||||||| | |||| ||||||||||| |||||||||||||| Sbjct 340 TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT 398 Query 223 GTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGTTGGT 282 |||||||| ||| |||||||||||||||||||||||||||||||||||| |||| || | Sbjct 399 GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT 458 Query 283 GGTTCT 288 |||||| Sbjct 459 GGTTCT 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18247192887 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5