BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320572
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 569 5e-162
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 165 3e-40
> AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453
Score = 569 bits (308), Expect = 5e-162
Identities = 361/386 (94%), Gaps = 5/386 (1%)
Strand=Plus/Plus
Query 6 GGATACAAAAGTTTTAACTGCACAATACGAACCTAAAGCAGGAACGAAGAAGAACGAAAC 65
||||||||||||| || |||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 69 GGATACAAAAGTTCTATCTGCGCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAA 128
Query 66 TGCTGAGAAGACTTGTTTTGAAGTCATATGGAA----TAAACCGGATAGATTGGTAATCG 121
|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 129 TGCTGAGAAGGCTTG-TTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGTAATCG 187
Query 122 TAAATGCATTTAGTTGTTCAGAAGGAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGG 181
||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 188 TAAATGCGTTTAGTTTTTCAGAAAGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAG 247
Query 182 AGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGACAGTTGTTCCAA 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 248 AGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAA 307
Query 242 ATACCACCACCTCAGTGATAATTCAGGTTGTACATGTTGGTGGTTCTGTATCGTTTTTAT 301
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 308 ATACCACCACCTCAGTGATTATTCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTAT 367
Query 302 GTTCCTTGCACCTAGGTAAACATTTACTGATGTTGTCTGAAACACATATAATCCGGTATA 361
||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 368 GTTCCTTTCACCTTGGTAAACATTTACTAATGCTGTCTGAAACACATATAATCCGGTATA 427
Query 362 AACAATGTCTGTTTGAGTATTTATAG 387
||||||||||||||||||||||||||
Sbjct 428 AACAATGTCTGTTTGAGTATTTATAG 453
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 165 bits (89), Expect = 3e-40
Identities = 114/126 (90%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 163 TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGCTACAGAGTATTTGT 222
||| |||||||||||| ||||||||| | |||| ||||||||||| ||||||||||||||
Sbjct 340 TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT 398
Query 223 GTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGTTGGT 282
|||||||| ||| |||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 399 GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT 458
Query 283 GGTTCT 288
||||||
Sbjct 459 GGTTCT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18247192887
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5