BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320599
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27920.1 | Symbols: SCPL51 | serine carboxypeptidase-like 51... 2130 0.0
AT5G59630.1 | Symbols: | pseudogene, glycine-rich protein, bl... 86.1 8e-16
> AT2G27920.1 | Symbols: SCPL51 | serine carboxypeptidase-like
51 | chr2:11885571-11889176 REVERSE LENGTH=1725
Length=1725
Score = 2130 bits (1153), Expect = 0.0
Identities = 1315/1393 (94%), Gaps = 11/1393 (1%)
Strand=Plus/Plus
Query 1 ATGAAGA-AATCCGTTGTTCATCTTGTGATTCTATGCCTCATTGTGTCATGTACCAATGG 59
||||||| || | |||||| |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 134 ATGAAGACAA-CAGTTGTTTATCTGGTGATTCTATGTCTCATTGTTTCATGTACCAATGG 192
Query 60 ACAAACCAAACCTGTAAGAAGAAGTAACTCCAATGGATCCGAAGCTTGGGGATACGTCGA 119
| ||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 193 AGAAACCAAACATGTAAGAAAAATTAACTCCGATGGATCCGAAGCTTGGGGATACGTCGA 252
Query 120 AGTTAGACCAAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATATAGAGTTGAAGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 253 AGTTAGACCAAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATATAGAGTTGAAAA 312
Query 180 TCCTTCTAAGCCATGGCCTATCATCCTCTGGCTTCAAGGTGGACCTGGAGCTTCAGGGGT 239
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 313 TCCTTCCAAGCCATGGCCTATCATCCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGGGT 372
Query 240 TGGAATAGGGAATTTTCAGGAGGTTGGACCATTAGACACATTTCTCAAGCCCAGAAACTC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TGGTATAGGGAATTTTCAGGAGGTTGGACCATTAGACACATTTCTCAAGCCCAGAAACTC 432
Query 300 AACTTGGTTGAAGAAGGCCGATCTCTTGTTTGTGGATAGTCCAGTTGGGTCAGGTTATAG 359
||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || ||
Sbjct 433 AACTTGGTTGAAGAAAGCCGATCTTTTGTTTGTGGATAGTCCAGTTGGGGCAGGGTACAG 492
Query 360 TTTCGTGGAGGGGAATCAAAAGGATTTGTATGTGAAAAGTGATGAAGAAGCAGCAAAAGA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 493 TTTCGTGGAGGGCAATCAAAAGGATTTGTATGTGAAAAGTGATGAAGAAGCAGCACAAGA 552
Query 420 TTTGACCAAACTGTTGCAACAACTCTTCAACAAAAACCAGACTTTAAACCAAAGCCCTCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TTTGACCAAACTGTTGCAACAACTCTTCAACAAAAACCAGACTTTAAACCAAAGCCCTCT 612
Query 480 CTTCATTGTTGCTGAATCTTATGGTGGCAAAATTGCGGTTAAACTCGGTTTATTGGTT-T 538
||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |
Sbjct 613 CTTCATTGTTGCTGAATCTTATGGTGGCAAAATCGCGGTTAAGCTCGGTTTATCGGTTAT 672
Query 539 TCGACGCGGTTCAATCTGGCAAATTAAAGCTTCAACTTGGAGGAGTGATTTTGGGAGATA 598
| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 673 T-GACGCAGTTCAATCTGGCAAATTGAAGCTTCATCTTGGAGGAGTGATTTTGGGAGATA 731
Query 599 GTTGGATATCCCCTGAAGATTTTGTGTTTTCATGGGGACCTCTTCTCAAGTATGTCTCTA 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 732 GTTGGATATCCCCTGAAGATTTTGTGTTTTCATGGGGACCTCTTCTCAAGCATGTCTCTA 791
Query 659 GGCTTGATGACAATAGCTTGGATCTCTCTACTAGCAGCTTAGCCGAGAAGATTAAAACAC 718
|||||||||||||| |||||||| ||||| |||| ||||| ||||||||||||||||
Sbjct 792 GGCTTGATGACAATGGCTTGGATAGCTCTAATAGC---TTAGCAGAGAAGATTAAAACAC 848
Query 719 AAATTAAGAATGGTGAATACGTTGAAGCCACGCAAACATGGATGGACCTCGAAACCTTGA 778
||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 849 AAATTAAAAATGGTGAATACGTTGGAGCGACGCAAACATGGATGGACCTCGAAAACTTGA 908
Query 779 TTAGTTCCAAATCCAATT-CAGTCGATTTTTACAATTTTCTACTGGATACTGAAATGGAC 837
|||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||
Sbjct 909 TTAGTTCCAAATCCAATTTC-GTCGATTTTTACAATTTTCTATTGGATACTGGTATGGAC 967
Query 838 CCTGTCTCGCTTACGACGAGTTTaaaaatcaaaaaagaagagaaaatataaaaGTATTCA 897
||||||||||| || |||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 968 CCTGTCTCGCTCACAACGAGTCTAAAAATCAAAAAGGAAGAGAAAATAAAAAAGTATTCA 1027
Query 898 AGATATTTAAATGATTTGAGAAGTTCAAGTGACGTAGAAGCTGCTGAAGGAGACCTTGGT 957
||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 1028 AGATATTTAAATGATATGAGAAGTTTAAGTGACGTAGAAGATGTTGAAGGAGACCTTGAT 1087
Query 958 AAGTTAATGAATGGTGTTATTAAGAAGAAGCTCAAGATTATTCCCAACGACCTCATATGG 1017
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AAATTAATGAATGGCGTTATTAAGAAGAAGCTCAAGATTATTCCCAACGACCTCATATGG 1147
Query 1018 GGAAACAATTCGAATGACGTGTTTGGAGTGATGGAGGCTGCTTTTATGAAACCCGTCGTT 1077
|||||||||||| |||| |||||| || |||||||||||||||||||||||||| ||
Sbjct 1148 GGAAACAATTCGGATGATGTGTTTACAGCAATGGAGGCTGCTTTTATGAAACCCGTAATT 1207
Query 1078 GAAGACGTCGATGAGCTTCTTGCCAAGGGGATAGATGTGACCATCTATAATGGACAACTT 1137
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1208 GAAGACGTCGATGAGCTTCTTGCCACGGGGGTAGATGTGACCATCTATAATGGACAACTT 1267
Query 1138 GATGTTATCTGTTCAACAAGTGGAACTGAAGCATGGGTTCACAAACTCAAGTGGGAGGGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1268 GATGTTATCTGTTCAACAAGTGGAACTGAAGCATGGGTTCACAAACTCAGGTGGGAGGGG 1327
Query 1198 CTAGAAGAATTCAAGAAAATGGAAAG-GAAGCCATTATTCTGCGAAAGTGACAGAACAAC 1256
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1328 CTAGAAGAATTCAAGAAAATGGAAAGAGA-GCCATTATTCTGCGAAAGTGACAGAGCAAC 1386
Query 1257 AAGAGGCTTTACCAAATCATACAAAAATCTCCATTTTTATTGGATTCTTGGTGCTGGTCA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AAGAGGCTTTACCAAATCATACAAAAATCTCCATTTTTATTGGATTCTTGGTGCTGGTCA 1446
Query 1317 TTTTGTACCAGTAGATGAGCCATGTGTTGCATTAAAAATGGTTGGAGAAATAACGAAGTC 1376
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1447 TTTTGTACCAGTAGATGAGCCATGTGTAGCATTAAAAATGGTTGGAGAGATAACCAAGTC 1506
Query 1377 ACCACAACTTTGA 1389
|||||||||||||
Sbjct 1507 ACCACAACTTTGA 1519
> AT5G59630.1 | Symbols: | pseudogene, glycine-rich protein,
blastp match of 53% identity and 5.4e-10 P-value to GP|9837280|gb|AAG00510.1||AF285172
leaf senescence-associated receptor-like
protein kinase {Phaseolus vulgaris} | chr5:24021433-24023925
REVERSE LENGTH=2493
Length=2493
Score = 86.1 bits (46), Expect = 8e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 579 AGGAGTGATTTTGGGAGATAGTTGGATATCCCCTGAAGATTTTGTG 624
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AGGAGTGATTTTGGGAGATAGTTGGATATCCCCTGAAGATTTTGTG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5