BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320603
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase... 534 3e-151
> AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase-related
/ HD-related | chr2:11861994-11863884 FORWARD LENGTH=880
Length=880
Score = 534 bits (289), Expect = 3e-151
Identities = 534/645 (83%), Gaps = 45/645 (7%)
Strand=Plus/Plus
Query 1 ATGGAGTTTTGGGGTATTGAGATTAAGCCAGAGAAGCCTTTTAAGATGATTTC-AAAAGA 59
||||||||||||||||| ||||||||||||| |||||| |||||| ||| | | ||||||
Sbjct 92 ATGGAGTTTTGGGGTATCGAGATTAAGCCAGGGAAGCCATTTAAGGTGA-TACAAAAAGA 150
Query 60 TGGATACATGGTCCATGCCAATCAGGTTACTCTTGGTGAGGTTGACAAGGTTAAAGAAGA 119
||||| ||||||||||||| ||||||||| |||||||| ||||| ||||||||| ||||
Sbjct 151 TGGATTCATGGTCCATGCCTCTCAGGTTACCCTTGGTGACGTTGAGAAGGTTAAAAAAGA 210
Query 120 TGAGAATGTTCCCGTTTATGTGAAGATTGGTGATGATAAGAGTGGGTTTATCATTGGAAA 179
||||| | || |||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 211 TGAGACTTTTGCCGTTTATGTGAAGATTGGTGATGATGAGAATGGGTTTATGATTGGAAA 270
Query 180 TCTCTCACAGAAGTTTCCTCAAGTTTCTCTTGATATCTTCTTAGGGCATGAGTTTGAGAT 239
|||||||||||||||||||||| ||||| ||||| ||| ||||||||| |||||||||||
Sbjct 271 TCTCTCACAGAAGTTTCCTCAATTTTCTATTGATCTCTACTTAGGGCACGAGTTTGAGAT 330
Query 240 TTCTCACAAGTCTAAAA-CAAGTGTCTATCTTATTGGCTACAGGACCCCTATGGACGAAC 298
||||||||| || || || |||||||||||||||| ||||||||| | || | | |
Sbjct 331 TTCTCACAACAGTACAAGCA-GTGTCTATCTTATTGGTTACAGGACCT-T-TG-ATG--C 384
Query 299 AATATCCTTTGTTTCATTGCCttttttttAGTTCAATTCATGATTCTGAGTTAGAGGAAT 358
| | || | | || | | || | ||| ||||||||||||||| ||||
Sbjct 385 --T-T--TT-GACGAACTGGATGAGGAG-A-TTGA-TTC-TGATTCTGAGTTAGATGAAT 434
Query 359 TTATGGAACAACAAATTGATGCTTTGCCTCAAAATGAGATGAATAATGAGATGAATCCTG 418
||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 435 ATATGGAACAACAAATTGCTGCTTTGCCTCAAAATGAGATCAAT------------CCTG 482
Query 419 AAGAAGATGGGTCA-TCCGACGACTCAGATGAGATGGGTTTGGACGAGGATGATGAGTCT 477
||||||||| | | |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 483 AAGAAGATGA-TGAATCCGAC---TCAGATGAGATGGGTTTGGACGAGGATGATGACTCT 538
Query 478 TCGGATGAAGAAGACGTAGAGGCTGAAGCAC----A--GGT---TCCTCCGAGCAAGAAG 528
|| ||||||||||| |||||||||||||||| | ||| |||||||||||| |||
Sbjct 539 TCAGATGAAGAAGATGTAGAGGCTGAAGCACCTTTAAAGGTGGCTCCTCCGAGCAAAAAG 598
Query 529 ATGTCAAATGGTATACATGGGATACCTAAAGGTGGAAACAAGAACAAGTCATCAGGAGGG 588
||| |||||||| | || |||| ||||||||||||| |||||||||||||||||||||
Sbjct 599 ATGCCAAATGGTGCATTTGAGATAGCTAAAGGTGGAAAGAAGAACAAGTCATCAGGAGGG 658
Query 589 AAGAAGAGATGTCCATTCCCTTGTGGTTCTTCCTGCAAAAAGTAG 633
||||||||||| ||||||||||||||| | || ||||||||||||
Sbjct 659 AAGAAGAGATGCCCATTCCCTTGTGGTCCCTCTTGCAAAAAGTAG 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5