BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320642
Length=2904
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 4052 0.0
> AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:12218045-12223828 FORWARD LENGTH=3376
Length=3376
Score = 4052 bits (2194), Expect = 0.0
Identities = 2704/2937 (92%), Gaps = 87/2937 (3%)
Strand=Plus/Plus
Query 1 ATGAATGAGAAAGGAGAAAAAACTTGTCCTCTATGTGCAGAGGAGATGGACTTGACTGAT 60
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 260 ATGAATGAGAAAGGAGAAAAGACTTGTCCTCTATGTACTGAGGAGATGGACTTGACTGAT 319
Query 61 CAACATCTTAAACCTTGCAAATGTGGTTATCAGATATGTGTTTGGTGTTGGCATCATATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CAACATCTTAAACCTTGCAAATGTGGTTATCAGATATGTGTTTGGTGTTGGCATCATATT 379
Query 121 ATAGAGATGGCTGAGAAAGATAAGACAGAGGGTCGCTGCCCTGCATGTCGTACCCCTTAT 180
||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||
Sbjct 380 ATAGAGATGGCTGAGAAAGATAAGACAGAGGGTCGTTGTCCTGCATGTCGTACCCGTTAT 439
Query 181 GATAAGGAAAAGATTGTTGGGATGACAGTCAGCTGTGAAAGGTTGGTTGCTGAACTTAAC 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 440 GATAAGGAAAAGATTGTAGGGATGACAGTCAGCTGTGAAAGGTTGGTTGCTGAATTTTAC 499
Query 241 AATGACCGGAAAAAGTCACAGAAGGCGAAAACTAAACCTTCAGAGGGAAGGAAAGATCTA 300
| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 500 ATTGACCGGAAAAAGTCACAGAAGGCGAAGCCTAAACCTGCGGAGGGAAGGAAAGATCTA 559
Query 301 ACTGGTGTGAGAGTCATCCAGAGAAATTTGGTTTACGTTATGAGCTTGCCTTTTGACCTG 360
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 560 ACTGGTGTGAGAGTTATTCAGAGAAACTTGGTTTACGTTATGAGCTTGCCTTTTGACCTG 619
Query 361 GCAGATGAAGATCTTTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAA 420
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GCAGATGAAGATATGTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAA 679
Query 421 GTAGCAATGTCTCGGACTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GTAGCAATGTCTCGGACTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGT 739
Query 481 GTATATATTACTTACTCCAAAGAGGAGGAAGCAATTCGATGTATCCGTTCAGTACATGGA 540
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 740 GTATATATTACTTACTCCAAAGAGGAGGAAGCGATTCGATGTATCCGATCAGTACATGGA 799
Query 541 TTTATTTTGGATGGTAGAAATTTGAAGGCATGTTTTGGAACCATGAAGTATTGTCATGCG 600
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 800 TTTATATTGGATGGTAGAAATTTGAAGGCATGTTTTGGAACCATGAAATATTGTCATGCG 859
Query 601 TGGTTGAGAAATATGCCTTGCTCCAATTCTGAGTGCCTTTATTTGCATGAGATTGGTTCC 660
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct 860 TGGTTGAGAAACATGCCTTGCTCCAATGCTGAATGCCTTTATTTGCATGAGATTGGTGCC 919
Query 661 CAAGAGGATAGTTTCACAAAAGATGAGACCATATCAGTGCATATGAGGAGAATGGTTCAA 720
||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct 920 CAAGAGGATAGTTTCTCAAAAGATGAGACCATATCAGCGCACATGAGGAAAATGGTTCAA 979
Query 721 GAAATTACTGGTTGGAGGGATCATTATGTACGGCGTTCAGGGAGCATGTTACCTCCACCA 780
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 980 GATATTACTGGTTGGAGGGATCATTATGTGCGGCGTTCAGGGAGCATGTTACCTCCACCA 1039
Query 781 GTTGATGATTATGTTGATAATGAGTCTAGCACAAGAACAATTCCAAAAGTTGTTTTGAAT 840
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1040 GTTGATGATTATGTTGATAATGAGTCTAGCACAAGAATTATTCCAAAAGTTGTTTTGAAT 1099
Query 841 AATGCACATAGTGTCGCTAAAAATTCTCCTCCAAATGACAGCAACAGTCAATCTGTTACT 900
|||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1100 AATGTACATAGTGCCGCGAAAAATTCTCCTCCAAATGACAGCAACAGTCACTCTGTTACT 1159
Query 901 CTTCCTGCTGGAGCCATGTGGGGAATGCATTCTTCAAGCCAGTCTTCGGTACCAAATACA 960
||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 1160 CTTCCTGCTGGAGCCATGTGGGGAATGCA----T--------TCTTCGGTACCGAATACA 1207
Query 961 CCAAGTTCTAGGGAACCCTTAAAAGACAAGA-CTGCTACAGTCTCATCTGCGGTTGCAAT 1019
|| ||||||||||||||||| |||||| | |||||||||| |||||||||||||||||
Sbjct 1208 CCGTCTTCTAGGGAACCCTTAAGAGACAA-ATCTGCTACAGTTTCATCTGCGGTTGCAAT 1266
Query 1020 AAATCCTACACAGATGTCTTTACATCGCAGTGATGAATTAAAGAAGCCAACATTAGAGGA 1079
|||||||||||||| || || | ||| ||||||||||||| ||||||| ||||||| |
Sbjct 1267 CAATCCTACACAGATCTC-TT-C-TCGTAGTGATGAATTAAGGAAGCCAGCATTAGA-G- 1321
Query 1080 TAATCGTACTGCAGATGGAAATGCTTTGAAACCACCAAGCCTATTGGATGGTCAAACTGA 1139
| |||||| |||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 1322 -----G--CTGCAGGTGGAAATGTTTTGAAACCACAAAGCCTATTGGATGGGAAAACTGA 1374
Query 1140 TTTTCCTGAGCTCTCCGT-GTCTAATAAGACCCAGATCAGTAATAGTAGGGAA-GTAGTC 1197
|||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||
Sbjct 1375 TTTTCCTGAGCTTTCC-TCATCTAATAAGACCCAGATCAGTAATAGTA-GGAACGTAGTC 1432
Query 1198 TCTGTCAGTGTGGATAATATTAGAGCTATTAGTGAGCCATCAGATTGCACAGACTTTCCA 1257
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1433 TCTGCCAGTGTGGATAATAGTAGAGCTATTAGTGAGCCATCAGATTGCACAGACCTTCCA 1492
Query 1258 GAACATACTTCTCAGTCTAGTAGATCCATGCTGTCTAATGGAAACAAAATGATTAATAGA 1317
|||| | | | | | | | | |||||||||||||||||||||||||| |||
Sbjct 1493 GAAC--A----T-A--C---T---T-C-T-CTGTCTAATGGAAACAAAATGATTAACAGA 1534
Query 1318 AGAATACAGAGTGTATGCAGCGATGATGTGTCAGTGGATGCAGATAGTGCTGTGGATGGC 1377
|||||||||| || ||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 1535 AGAATACAGAATGGATGCAGCAATGTTGTGTCAGTGGATGCAGATAGTGTTGTGGATGGC 1594
Query 1378 TATCATGGAATAACAAGATCTGACAATTCACATTTTGATCATGCTTCCATAAAGTCATCT 1437
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 1595 TATCATGGAATAACAAGATCTGACAAATCACATATTGATCATGCTTCCATAAAGCCAACT 1654
Query 1438 CATACAGAGGTGTCCCAAGATTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAG 1497
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CTTACAGAGGTGTCCCAAGACTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAG 1714
Query 1498 CCATTACAAAAGTCCGGTAGAACTAACGCAAATGAGGTCGGTGTCTCGAGAGAAGAAGTT 1557
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1715 CCATTACAAAAGTCTGGTAGAACTAACGCAAATGAGGTTGGTGTCTCGAGAGAAGAAGTT 1774
Query 1558 AATACAGGTACTTCTTTGATGTCACCATTGAGAACAGATCATTATCTTGAAGCCGAGGAT 1617
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||
Sbjct 1775 AATAGAGGTACTTCTTTGATGTCACCATTGGGAACAGGTCATTATCTTGAAGCTGAGGAT 1834
Query 1618 GATATATCGTTGTTCAATAGACAAAGACTCAAGGATCCAGAAGTTCTTAGCTGTCAGCCC 1677
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1835 GATATATCTTTGTTCTATAGACAAAGACTCAAGGATCCGGAAGTTCTTAGCTGTCAGTCC 1894
Query 1678 AATGGTTTCCTACGCCCGTCAAATAGTATGCAGCCTTGTTCATCCCAGTATAAGGCTGAG 1737
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1895 AATGGTTTCCTACGCCCGTCAAATTGTATGCAGCCTTGTTCATCCCAGTATAAGGCTGAG 1954
Query 1738 CATGATGAAACCAGGACTGTGTTTGGATCTTCCTATTCTGACAGCAGAGGAAGTAATATA 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1955 CATGATGAAACCAGGACTGTGTTTGGATCTTCCTATTCTGACAGCAGGGGAAGTAATATA 2014
Query 1798 GCACCCATCTCACATGGATATACCGAGATGCCACATAGGGAGCCCAATCATTTAAACGGC 1857
|||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 2015 GCACCCATCTCAAATGGATATACCGAGATGCCACTTAGTGAGCCCAATCAGTTAAACGGC 2074
Query 1858 AGTCTTAACCATTCTATTTTGGTTCCAGACAAGGCAAGGGACACACAGCCAATCGAAAAA 1917
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2075 AGTCTTAACCATTCTATTTTGGTTCCAGACAAAGCAAGGGACACACAGCCAATTGAAAAT 2134
Query 1918 AGTTTCGTCGACTTGCAAGAAAACTCTAGGAGTGAAATAGATGACAGGATAATTGCAAAT 1977
||||||| |||| || |||| | | | ||||||||||||||||||||||||||||||
Sbjct 2135 TGTTTCGTTGACTCCCATGAAAGCCC-A--AGTGAAATAGATGACAGGATAATTGCAAAT 2191
Query 1978 ATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTTTGCAAA-CCTATT 2036
|||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 2192 ATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTATGCAAATCC-ATT 2250
Query 2037 TGGGGAAAGTGACGAAGAGGCCAGGTCTCTTCAGCTAGCCAGTTCCAGTAAAGTTGAGGA 2096
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2251 TGGGGAAAGTGACGAAGAGGCCAGGTCTCTTAAGCTAGCCAGTTCCAGTAAAGTTGAGGA 2310
Query 2097 TAATCAGTCCCGGTTTTCTTTTGCAAGGCAAGAGGAATCAAAGGATCAATCTTTTGATTC 2156
|||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 2311 TAATCAATCCCGGTTTTCTTTTGCCAGGCAAGAGGAACCAAAGGATCAAGCTTTTGATTC 2370
Query 2157 TTATAACGTC-CATAACCAGATATCACGTGGCAATGAATTCTACCAGGATTCTTTAGAAG 2215
||| |||| | | ||||||||| |||||||||||||| ||||||||| |||||| ||||
Sbjct 2371 TTACAACGCCTC-TAACCAGATGTCACGTGGCAATGACTTCTACCAGAATTCTTCAGAAC 2429
Query 2216 GACAGAGTCCTAATATGGGTATGTTTGGGACGTATAATGGTCTTTCATCTGGTTATCGCA 2275
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2430 GACAGAGTCCTAATATGGGTATGTTTGGGACCTATAATGGTCTTTCATCTTGTTATCGCA 2489
Query 2276 GAGGACTAGACTATGTCACGGAAAGCTCCACTTTGCCATCATCCTATAAACCTAACT-CT 2334
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 2490 GGGGACTAGACTACGTCACGGAAAGCTCCACTTTGCCCTCATCCTATAAACCTA-CTTCT 2548
Query 2335 GTTCCAAGATGTCTGGTTTCAGCACCACCCGGCTTTTCAGTTCCAAGT--A-G---ACCT 2388
||||||||||||| ||||||||||||||| |||||||||||||||| | | | ||||
Sbjct 2549 GTTCCAAGATGTCCGGTTTCAGCACCACCTGGCTTTTCAGTTCCAACTCCAAGTCGACCT 2608
Query 2389 CCTCCTCCAGGCTTCTCCTCAAATGGGAGAGACCATCAGATTTTTCATGGCCTTTCAGGA 2448
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 2609 CCTCCTCCAGGCTTCTCCTCAAATGGGAGAGACCATCAGATGATTGATGGCTTTTCAGGA 2668
Query 2449 AACTCTCGTTTTTCTGATTCAATAGCGTACGGTAATCATTATCAGCAGTCACTTCCAATT 2508
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 2669 AACTCTCGTTTTTCTGATTCAATTGCGTACGGTAATCACTATCAGCAGTCACTTCCGATT 2728
Query 2509 GATAATGTGAGGGATGTTCAATTCATGGATCCTGCCATTTTGGCCGTTGGTCAAGGCTTT 2568
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2729 GAAAATGTGAGGGATGTTCAATACATGGATCCTGCCATTTTGGCCGTTGGTCAAGGCTTT 2788
Query 2569 GAGAATGCAAGCCTAGATTTCAGATCAAACTTCCAAGGAAACACAAACATGTTTGGAAAC 2628
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 2789 GAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAACATGTATGGAAGC 2848
Query 2629 GCGGCAAAGCTCCAACAACAACAGCAA---GCGGTAATGCAGA-------G-C----C-- 2671
||||||||||||||||||||||| ||| ||||||||||||| | | |
Sbjct 2849 GCGGCAAAGCTCCAACAACAACAACAACAAGCGGTAATGCAGAACCCTTTGTCTATGCAG 2908
Query 2672 --C--TTTGTCTTCGCATCAAAACTGTAGATTTACTGATTCTTTGGGAATGGCACCAAGG 2727
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2909 AACCCTTTGTCTTCGCATCAAAACTGTAGATTCACTGATTCTTTGGGAATGGCACCAAGG 2968
Query 2728 CTTATAGATCAATCTCAAGGCAATAACATCCTGACTAGAAATCTGCCCTTGCCAAATGGT 2787
|||||||||||||||||||||||||| | |||||||||||| || ||||||| ||||||
Sbjct 2969 TTTATAGATCAATCTCAAGGCAATAACTTACTGACTAGAAATATGGCCTTGCCTAATGGT 3028
Query 2788 CGTCACTGGGATGCGTTGATGAGTAACGAGATCCAAACTCGAAACAGACTCCAAAATGAG 2847
| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3029 C---ACTGGAATGGGTTGATGAGTAACGAGATCCAAACTCGAAACAGACTTCAAAATGAG 3085
Query 2848 AGACTTGTTGGATCGACAAATTGGATCCCCGGTTACAATGGGACGTTCAGGATTTAA 2904
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 3086 AGACTTGTTGGTTCGACTAATTGGATCCCTGGTTACAATGGGACGTTCAGGATGTAA 3142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144330295011
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5