BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320646
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28580.1 | Symbols: | Plant protein of unknown function (DU... 2351 0.0
AT2G44930.1 | Symbols: | Plant protein of unknown function (DU... 1086 0.0
> AT2G28580.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr2:12244859-12248450 FORWARD LENGTH=1817
Length=1817
Score = 2351 bits (1273), Expect = 0.0
Identities = 1497/1605 (93%), Gaps = 15/1605 (1%)
Strand=Plus/Plus
Query 13 TCAGAATCTC-AAGAGATACTCCTGAAGCGAGGGTATATAAAACACAACAAGCA-CTCTA 70
|||||||||| | || || || ||||||||| |||||||||| || || |||| | | |
Sbjct 39 TCAGAATCTCTAGGA-ATGGTCATGAAGCGAGAGTATATAAAAGACGACGAGCACCAC-A 96
Query 71 GATTTCTAGGCACGGCCCTGGGTGAGATCCTCAAACACAATGAGCCCTCCACATCTCTAA 130
|| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 97 AATCTCTCGGCACCGCCCTGGGTGAGATATTGAAACACAATGAGCCCTCCACATCTCTAA 156
Query 131 GTACAGTTCTGGGCGAGATGTTTAAAAACAACGAGGAGAAGGAACAAATATTTTCGGATC 190
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 157 GCACAGTTCTGGGCGAGATGTTTAAAAACAACGAGGAGAAGGAACATATTTTTTCGGATC 216
Query 191 TAGAACGAGGAACAATGCTAACAAGACCTATGGGAGAAGAATATATTC-AGA--TACGGC 247
|||||||||||||||||||||||||||| ||||| |||| |||||||| | | ||||||
Sbjct 217 TAGAACGAGGAACAATGCTAACAAGACCAATGGGCGAAGGATATATTCAATATCTACGGC 276
Query 248 TTTCTAAAGACACAACGACTCAA-C--CGGATTCTAAGATACCCGGTCTTTGGTCTTCTT 304
||||||||| | ||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 277 TTTCTAAAG--A-GACGACTCAACCGGCGGATTCTAAGATTCCCGGTCTTTGGTCTTCTT 333
Query 305 CGGTTAAACCCGAGTTTTGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACC 364
| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CCGTTAGACCAGAGTTTTGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACC 393
Query 365 CCGAGGCTTACACTCCTCAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGTTG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 394 CCGAGGCTTACACTCCTCAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGCTG 453
Query 425 AAGCCTTCAAGCGCTATAAAACCGAGTTAAGATATTTGAACTATCTCAACATGGAGCTTC 484
||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 454 AAGCCCTCAAGCGCTACAAAACCGATTTAAGATATTTGAACTATCTGAACATGGAGCTTC 513
Query 485 ACAAGAAGAAGTGCCTTGATAGTATTGGAGATATATATGGGGAACAGCCTGTCAAAGAGT 544
||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 514 ACAAGAAGAAGTGCCTTGATAGTATTGCAGATATATATGGGGATCAACCTGTCAAAGAGT 573
Query 545 TCAGGAGACTCATTGAAAGAGATGAGAAATTCATAAGAGATAGCTACGCCGAGTCAACGA 604
|||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 574 TCAGGAGAATCATCGAAATAAATGAGAAATTCATAAGAGATAGCTACGCCGAGTCAACAA 633
Query 605 TTTGGATCAATACTAAAGATTTCGTAGAAATGATCCTCCATGACTCGGTGTTCATACTAA 664
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 634 TATGGATCAATACTAAAGATTTCGTAGAAATGATCCTCCACGACTCGGTGTTCATACTAT 693
Query 665 TGTTCTTCATTCAAACAGGAAGTACTCTAAACTTCAGCAAGAAAGAAGATATTCTTTTCA 724
|||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 694 TGTTCTTCATTCAAACCGGAAGTACCCTAAACTTCAACAAGAAAGAAGATATTCTTTTCA 753
Query 725 ACCAGAGTCGTCTCATAAACTCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACC 784
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 ACCAGAGTCGTCTCATAAACGCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACC 813
Query 785 AACTTCCTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTA 844
|||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 814 AACTCCCTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTCCTCAAATGTCAATACTA 873
Query 845 AGGAAACGTTTCGTGACATTACCCTTCGAGCTTTT-GGCTTCGAGGGAAAGATCAAAGAA 903
|||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||
Sbjct 874 AGGAAACGTTTCGTGATATTACCCTTCGAGCTTTTAGGTTT-GAGGGAAAGATCAAAGAA 932
Query 904 GAAGTGAGATTCCAACATTTTACTGATTTGTTTCGGTGTGTCCGTGTCAGCACACTTTCT 963
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 933 GAAGTGAGATTCCAACATTTTACAGATTTGTTTCGGTGTGTCCGTGTCAGCACACTTTCT 992
Query 964 TTGGCAGAAGAACAAATCAGTATAGCAAAGAATGAGCCACCGAAGAGCAGAAAGATTATG 1023
||| ||||||||||||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 993 TTGACAGAAGAACAAATTAACATAGCAAAAAACGAGCCACCGAAGAGCAGAAAGATTATG 1052
Query 1024 TACAACGCAGACAAACTAGACAGTGCAGGAGTGGATTTTGTGAATGTGGATGAAGAAAAT 1083
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1053 TACAACGCAGACAAACTAGACAGTGCAGGAGTGAATTTTGTGAATGTGGATGAAGAAAAT 1112
Query 1084 GATTTATCGTTGGTGATTACTTTCAAAGACGGAATCTTGCAAATGCCTTGTTTCACAGTG 1143
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1113 GATTTATCGTTGGTGATTACTTTCAAAGACGGAATCTTGAAAATGCCTTGTTTCACAGTG 1172
Query 1144 GAAGACAACACCGAGAGGGTTATGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCT 1203
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GAAGACAACACCGAGAGGGTCGTGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCT 1232
Query 1204 CAAACTGCTTATGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGACCAA 1263
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1233 CGAACTACTTTTGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGATCAA 1292
Query 1264 GACGTTGACTTGCTCGTCAAGAAAGGAATTGTAAAGGACTGGTTAGGACATCAAGGATCG 1323
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1293 GACGTTGACTTGCTCGCCAAGAAAGGAATTGTAAAGAACTGGTTAGGACATCAAGGATCA 1352
Query 1324 GTGACAGAAATGGTGAACAAGCTGTGTTTAGGGCTCGTGGATTTCGGATCTCACTATTGC 1383
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1353 GTGACAGAAATGGTAAACAAGCTATGTTTAGGGCTCGTGGATTTCGGATCTCACTATAGC 1412
Query 1384 GATATAGCCGAAAGCCTCAACAAACACTACGACAATCGTCTCAACAGATCGGTCGCCACT 1443
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1413 GATATAGTCGAAAACCTCAACAAACACTACGACAATCGTCTCAACAGATCTGTCGGCACT 1472
Query 1444 CTCCGGCGAGTTTATTTCAAAGATCTTTGGACCGGTACTGCCACCGTCGCCGCCGTTGTT 1503
|| |||||||||||||||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 1473 CTTCGGCGAGTTTATTTCAAAGATCTTTGGACCGGTACTGCCACCATTGCCGCAGTCGTT 1532
Query 1504 CTCCTCGTGTTGACTTTGATTCAGACTGTAGCTTCCATTCTCCAAGTCATAATGCAGAAC 1563
||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1533 CTCCTTGTGTTGACTTTAATTCAGACTGTGGCTTCCATTCTCCAAGTGATGATGCAGAAC 1592
Query 1564 GACAATAAGTCTCCGCCGCCTCCGGCTCCGTCCCGGGGACTGTAG 1608
||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1593 GACAATAAGTCTCCGCCTCCTCCAGCTCCGTCCCGGGGACTATAG 1637
> AT2G44930.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr2:18529523-18531752 REVERSE LENGTH=1806
Length=1806
Score = 1086 bits (588), Expect = 0.0
Identities = 1119/1369 (82%), Gaps = 62/1369 (5%)
Strand=Plus/Plus
Query 277 TCTAAGATACCCGGTCTTTGGTCTTCTTCGGTTAAAC-CCGAGTTTTGTTGCATCTATAG 335
||| |||| ||||| | ||| ||||||| ||| | | |||| |||||||||||||||
Sbjct 286 TCTGAGATTTCCGGTATATGGCCTTCTTC-GTTTAGCAAAGAGTATTGTTGCATCTATAG 344
Query 336 AGTACC-AGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCTCAAATGCTGCTAA 394
|||||| | |||||||| | | ||| || || ||||| ||||||||||| ||||| || |
Sbjct 345 AGTACCTA-ACCGGTTAAGGAGAGTTAATCCAGAGGCATACACTCCTCAGATGCTTCTCA 403
Query 395 TCGGACCTCTTCACCATTCCAAGAAAGTTGAA-G-CCTTCAAGCGCTATAAAACCGAGTT 452
|||| || ||||| ||||| ||||||| | || | |||| ||| | |||||||| ||
Sbjct 404 TCGGTCCACTTCAACATTCTAAGAAAGCT-AATGCCCTT-GAGCTTTCCAAAACCGATTT 461
Query 453 AAGATATTTGAACTATCTCAACATGGAGCTTCACAAGAAGAAGTGCCTTGATAG-TATTG 511
|||||||||| ||||| | ||||||||||||||||||||||||| |||| || | |||||
Sbjct 462 AAGATATTTGGACTATATGAACATGGAGCTTCACAAGAAGAAGTACCTTAAT-GCTATTG 520
Query 512 GAGATATATATGGGGAACAGCCTGTCAAAGAGTTC-AGGAGACTCATTGAAA-GAGATGA 569
| ||| ||||||||| || | || ||| ||| |||||| |||| |||| || |||
Sbjct 521 CAAATAAATATGGGGATCAAATTATCGAAGTTTTCAAGGAGA-TCATAGAAACAAG-TGA 578
Query 570 GAAATTCATAAGAGATAGCTACGCCGAGTCAAC-GATTTGGATCAATA-CTAAAGATTTC 627
||||||| | ||||| ||||||||||||||||| || |||||||| | || ||||||||
Sbjct 579 GAAATTCGTTAGAGAAAGCTACGCCGAGTCAACGGA-CTGGATCAA-ACCTCAAGATTTC 636
Query 628 GTAGAAATGATCCTCCAT-GACTCGGTGTTCATACTAATGTTCTTCATTCAAACAGGAAG 686
|| || |||||||| | | |||||||||||||||||| | |||| ||||| | | ||
Sbjct 637 GTTGATATGATCCTTC-TCGACTCGGTGTTCATACTAGGGGTCTTTATTCAGGCTGAAAC 695
Query 687 TACTCTAAACTTC-AGCAAGAAAGAAGATATTCTTTT-C---AACCAG--AGTCGTCT-C 738
||||| |||| || || ||||||||||| |||||||| | || || | | | | |
Sbjct 696 TACTCAAAACATCAAG-AAGAAAGAAGAAATTCTTTTCCATGAAGAAGATATTATTTTCC 754
Query 739 ---A---TAAACTC-T-ACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTTC 790
| | ||| | ||| | ||||||||||| |||||||| |||||||||||||| |
Sbjct 755 AGGAGCCTTGTCTCATAACCACTATTTTAGAAGACCTAATCTTACTCGAGAACCAACTCC 814
Query 791 CTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTAAGGAAA 850
|||||| ||||||||||||||||| | ||||||||||| |||||||| | || |||||||
Sbjct 815 CTTATGTCCTTTTAGAGAAACTCTCTAAACCTTTTTTCGCAAATCTTAAAACCAAGGAAA 874
Query 851 CGTTT-CGTGACATTACCCTTCGAGCTTTT-GGCTTCG-AGGGAAAGATCAAAGAA-GAA 906
| ||| |||||||||| ||||||||||||| || || | | ||| ||||||||||| |||
Sbjct 875 C-TTTCCGTGACATTATCCTTCGAGCTTTTAGG-TT-GAAAGGAGAGATCAAAGAAGGAA 931
Query 907 GTGAGA-TTCCAACATTTTACTGATTTGTTTC-GGTGTGTCCGTGTCAG-CACACTTTCT 963
|| | |||| |||||||| |||||| ||| | |||||||||| | ||||||| |
Sbjct 932 -CGA-ATTTCCGTCATTTTACAGATTTG-TTCAGACGTGTCCGTGT-GGAAACACTTTGT 987
Query 964 TTGGCAGAAGAACAAATCAGTATAGCAAAGAATGAGCCACCGAAGAGCAGAAAGATTATG 1023
||| || |||||||||||| | |||||| || |||||||| ||| || ||||| | ||
Sbjct 988 TTGACAAAAGAACAAATCAAAAGCGCAAAGGATAAGCCACCGGAGATCATAAAGAGTCTG 1047
Query 1024 TACAACGCAGACAAACTAGACAGTGCAGGAGTGGATTTTGTGAATGTGG-ATGAAGAAAA 1082
||||||||||||||||||||||||| ||||||||||||||| | ||| | ||| ||||
Sbjct 1048 CACAACGCAGACAAACTAGACAGTGCTGGAGTGGATTTTGTGCGTCTGGAAAGAA-AAAA 1106
Query 1083 TGATTTATCGTTGGTGATTACTTTC-AAAGACGGAATCTTGCAAATGCCTTGTTTCACAG 1141
||||||||||||||||| |||||| || | |||||||||| |||| ||||||||| ||
Sbjct 1107 CGATTTATCGTTGGTGATAACTTTCGAACG-CGGAATCTTGGAAATACCTTGTTTCTTAG 1165
Query 1142 TGGAAGACAACACCGAGAGGGTTATGAGGAATTTAATGGCACTCGAGCAATGTCATTACC 1201
||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1166 CGGACGACAACACCGAGAGGATTATGAGGAACTTAATGGCCCTCGAGCAATGTCATTACC 1225
Query 1202 CTCAAACTGCTTATGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGACC 1261
||| ||||||||||||||| ||||||| | ||||||||||| || ||| | |||||||
Sbjct 1226 CTCTCACTGCTTATGTTTGTAACTACATAGCTTTCTTGGATTTTCTTATCGACACCGACC 1285
Query 1262 AAGACGTTGACTTGCTCGTCAAGAAAGGAATTGTAAAGGACTGGTTAGGACATCAAGGAT 1321
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct 1286 AAGACGTTGACTTGCTCGTCAAGAAAGGAGTTATAAAGAACTGGTTAGGACATCAAGCAT 1345
Query 1322 CGGTGACAGAAATGGTGAACAAGCTGTGTTTAGGGCTCGTGGATTTCGGATCTCACTATT 1381
||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1346 CGGTGGCGGAAATGGTAAACAAGCTGTGTTTAGGGCTTGTGGATTTTGGATCTCACTATT 1405
Query 1382 GCGATATAGCCGAAAGCCTCAACAAACACTACGACAATC-GTCTCAACAGATCGGTCGCC 1440
|| ||||||||| || ||||||||||||||||| || | ||| ||| ||||| | |||
Sbjct 1406 ACGGTATAGCCGATAGACTCAACAAACACTACGA-AAGCCGTCGCAATAGATCCATAGCC 1464
Query 1441 ACTCTCCGGCGAGTTTA-TTTCAAAGATCTTTGGACCGGTACTGCCACCGTCGCCGCCGT 1499
|| |||||||||||||| ||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 1465 ACACTCCGGCGAGTTTACTTT-AAAGATCTTTGGACCGGAACTGCCACCATTGCCGCCGC 1523
Query 1500 TGTTCTCCTCGTGTTGACTTTGATTCAGACTGTAGCTTCCATTCTCCAAGTCATAATGCA 1559
||| |||||||||||||||||||| ||| || |||||| | ||||| || | |||
Sbjct 1524 CGTTATCCTCGTGTTGACTTTGATTGGGACGGTTGCTTCCGTACTCCAGGTGAC---GCA 1580
Query 1560 GAACGACAATAAGTCTCCGCCGCCTCCGGCTCCGTCCCGGGGACTGTAG 1608
||| || ||||| ||||| |||||||||||| || ||| |||| ||||
Sbjct 1581 GAAGGATAATAATTCTCCACCGCCTCCGGCTATGTTCCGAGGACCGTAG 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5