BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320665
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28780.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 3725 0.0
> AT2G28780.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: mitochondrion; EXPRESSED
IN: inflorescence meristem, root, flower; EXPRESSED DURING:
petal differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343);
BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to
667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa
- 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes
- 15 (source: NCBI BLink). | chr2:12340034-12343421 REVERSE
LENGTH=2596
Length=2596
Score = 3725 bits (2017), Expect = 0.0
Identities = 2272/2396 (95%), Gaps = 13/2396 (1%)
Strand=Plus/Plus
Query 1 ATGCTAATGACGGAGAGAGGCCGAGCCATGTGGCGCACGTGCCTAGCCTCAGCGTTCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATGCTAATGACGGAGAGAGGCCGAGCCATGTGGCGCACGTGCCTAGCCTCAGCGTTCCGA 200
Query 61 ACAGCTCTAGCCTGCACAATCGTTGGCTCAGCTACACTTTACGGTCCCGAATGGATCAAC 120
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 201 ACAGCTCTAGCCTGCACAATCGTTGGTTCAGCTACACTATACGGTCCAGAATGGATCAAC 260
Query 121 CGCCACGTGGCATTCCCGGCCTTCTCTTACGTCACTGTTATCCTCATCATCACCGATGCT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 261 CGCCACGTGGCATTCCCGGCCTTCTCTTACGTCACGGTTATCCTCATCATCACGGATGCT 320
Query 181 ACACTCGGAGACACGCTACGTGGCTGCTGGTTAGCTCTTTACGCCACGTGTCAAAGCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 321 ACACTCGGAGACACGCTACGTGGCTGCTGGTTAGCTCTTTACGCCACGTGTCAGAGCGTG 380
Query 241 GGACCTGCGATCATCACGTTAAAGCTTATTGGACCAGCTCGTCTCACGGCCGAAACTACG 300
|||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||
Sbjct 381 GGACCTGCGATCGTCACGTTAAAGCTTATAAGACCAGCTCGTCTGACAGCCGAAACCACG 440
Query 301 GCTCTCGCTGCGGCTCTAGCGGCGTTCGTGGTGGTGCTACCTAATAGTTCGACCCACTTG 360
||||| || ||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct 441 GCTCTGGCGGCGGCTCTAGCGGCGTTTGTGGTAGTGCTGCCTAACAGTTCGACTCACTTG 500
Query 361 GTGGCTAAGAGAATCGCGTTAGGCCAGATCGTTCTCATTTATGTTATTGGTTATATAAAA 420
||||||||||||||||||||||| || |||||||| || ||||||||||||||||| |||
Sbjct 501 GTGGCTAAGAGAATCGCGTTAGGACAAATCGTTCTTATATATGTTATTGGTTATATCAAA 560
Query 421 GGAGCTGAGACTGATCCAGTTATGCACCCTCTTCAAGTCGCGGCTAGCACCGCGCTTGGT 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GGAGCTAAGACTGATCCAGTTATGCACCCTCTTCAAGTCGCGGCTAGCACCGCGCTTGGT 620
Query 481 GTTGTAGCTTGCGTTCTTGCACTACTCGTCCCACTTCCTCGCTTGGCTACTTGTGAGGTG 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 621 GTTGTAGCTTGCGTTCTTGCACTACTCGTCCCACTACCTCGCTTGGCTACTTGCGAGGTG 680
Query 541 AAACAAAGCTGCAAAGAGCTTGGTCAAAATGTAACAACGAGAGTGAAGTTGTATATGAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAACAAAGCTGCAAAGAGCTTGGTCAAAATGTAACAACGAGAGTGAAGTTGTATATGAAG 740
Query 601 GCATTTTGCTCCGATGAT-GCCATGTCTGCAACGGCTTCAGTCTCACAGGCTCGAGTGTT 659
|| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 741 GCTTTTTGCTCCGATGATAG-CATGTCAGCAACGGCTTCAGTCTCACAGGCTCGAGTGTT 799
Query 660 GGCTCGTTCTTCCTCTAAGCTTTATCAAACACTCAAACGTTACCAACCAAGCATGACATG 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GGCTCGTTCTTCCTCCAAGCTTTATCAAACACTCAAACGTTACCAACCAAGCATGACATG 859
Query 720 GGAGAGGCTTCCATTTAAGATATGGAGGTGGCAAAACGTGAATGATAACAAAGGAGAGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GGAGAGGCTTCCATTTAAGATATGGAGGTGGCAAAACGTGAATGATAACAAAGGAGAGAA 919
Query 780 ACTACAAAGCATGGAAATTGCTCTTAGAGGAATGGAAATGGTAGTCGCAAGCAAATCTCC 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 920 ACTACAAAGCATGGAAATTGCTCTTAGAGGAATGGAAATGGTAGTAGCAAGCAAATCTCC 979
Query 840 TATTCCTTCGAGCTTACTTGCGGGTGAAGTAAAAGAAGATCTCAAGAATATACAAGAACG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TATTCCTTCGAGCTTACTTGCGGGTGAAGTAAAAGAAGATCTCAAGAATATACAAGAACG 1039
Query 900 TGTGATTCTCTCAATCAAACGAGTTAACAATAGT-CGGCAACCGTCGGTAACACCAGAAT 958
||||||||||||||| ||| |||| || |||||| || |||||||| |||||||||||||
Sbjct 1040 TGTGATTCTCTCAATTAAAAGAGTGAATAATAGTTCG-CAACCGTCAGTAACACCAGAAT 1098
Query 959 CCGATCCGAAAAAACCTGATGAGTGCCTCCAAACACTTCAGGAAATCCCGGAAACGCCTC 1018
| ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1099 CTGATCCGAAAAACCCCGATGAGTGCCTCCAAACACTTCAGGAAATCCCGGGAACGCCTC 1158
Query 1019 AAGATTTACCCTTTTACTTCTTCTTGTTCTGCATCAGGCTCCTTGAAATCATCACAATGG 1078
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1159 AAGATTTGCCCTTTTACTTCTTCTTGTTCTGCATCAGGCTCCTTGAAACCATCATAATAG 1218
Query 1079 CTAAACCGGAGGAGAACAAGGTCAAGGTCTTAGAAAA-A--TCCAAAACTAGATCTTGGA 1135
||||||||||||||||||| ||||||||||||||||| | | ||| || || |||||||
Sbjct 1219 CTAAACCGGAGGAGAACAAAGTCAAGGTCTTAGAAAACAAATTCAAGACGAGGTCTTGGA 1278
Query 1136 TAAGTGATTGGGACAGCAAGAAGGTTATGCCCGCGTTGAAGCTATCGCTTTCATTAGGCT 1195
|||||||||||||||||||||| ||||||| ||| | |||||||| || ||||||||||
Sbjct 1279 TAAGTGATTGGGACAGCAAGAAAATTATGCCGGCGCTAAAGCTATCACTCTCATTAGGCT 1338
Query 1196 TAGCGATTATGCTAGGTTCAATGTTTAGTAAGCCAAACGGGTATTGGGCTGGTTTACCCG 1255
|||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1339 TAGCGATTTTGCTAGGTTCGATGTTTAGTAAGCCAAACGGTTATTGGGCTGGTTTACCCG 1398
Query 1256 TAGCCA-TCAGCTTCGCAGCGGCGAGAGAGGCGACGTTTAAAGTGGCGAATGTGAAGGCA 1314
|||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1399 TAGC-AGTCAGCTTCGCAGCGGCCAGAGAGGCGACGTTTAAAGTGACGAATGTGAAGGCA 1457
Query 1315 CAAGGGACAGTGATAGGGACAGTGTATGGAGTGATGGGATGTTTTGTGTTTCAGAAGTTT 1374
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1458 CAAGGGACAGTGATAGGGACAGTGTATGGAGTGATGGGCTGTTTTGTGTTTCAGAAGTTT 1517
Query 1375 TTGACGGTTAGGTTTCTTTCTTTGCTTCCATGGTTTCTCTTCTCTAGCTTCTTGAGCAAG 1434
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1518 TTGACGGTTCGGTTTCTTTCTTTGCTTCCATGGTTTCTCTTCTCTAGCTTCTTAAGCAGG 1577
Query 1435 AGCC-GAATGTACGGACAGGCCGGAGGGATATCAGCGGCGATAGGAGCCGTTTTGATTCT 1493
||| || ||||||| || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1578 AGCAAGA-TGTACGGGCAAGCCGGAGGGATATCAGCGGCCATAGGGGCCGTTTTGATTCT 1636
Query 1494 CGGACGAAAGAATATCGGGCCACCAAGCGAGTTCGCGATCGAGAGAATCATCGAGACTTT 1553
|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1637 CGGAAGAAAGAATTTCGGGCCACCAAGCGAGTTCGCGATCGAGAGAATTATCGAGACTTT 1696
Query 1554 TATTGGGTTGTCTTGTTCGATCATGGTGGAGCTTGTCTTTCAGCCCACGAGAGCCGCTAA 1613
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1697 TATTGGGTTGTCTTGTTCGATCATGGTGGAGCTTGTCTTTCAGCCTACAAGAGCCGCTAA 1756
Query 1614 CATAGCGAAACTTGAGCTCTCTAGAAGCTTCCACGCTTTGTACGAGTGTGCAAGCTTGTT 1673
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 CATAGCAAAACTTGAGCTCTCTAGAAGCTTCCACGCTTTGTACGAGTGTGCAAGCTTGTT 1816
Query 1674 TGGAGCTAAAGCTAGTAAAGCGGAGATAATGGAGAGTCAAAAGAAGTTGAGAAGTCATTT 1733
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1817 TGGAGCTAAAGCGAGTAAAGCAGATATAATGGAAAGTCAAAAGAAGTTGAGAAGTCATTT 1876
Query 1734 AAATGAGCTCAAGAAGTTCACAGCAGAAGCCCACGCAGAGCCAAGTTTCTGGTTTTCGCC 1793
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1877 AAATGAGCTCAAGAAGTTCACAGCAGAAGCCCATGCAGAGCCAAGTTTCTGGTTTTCGCC 1936
Query 1794 TTTCAACTTTTCTTGCTACGAAAAGCTTTTCAAGTCATTGTCTAAAATGGCTGATCTATT 1853
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1937 TTTCAACTTTTCTTGCTACGAAAAGCTGTTCAAGTCATTGTCTAAAATGGCTGATCTATT 1996
Query 1854 GCAATTCAGTGGTTACGCGATAGGCTTTCTTGGAGAACAAGGAAAAACAAAATCACCACA 1913
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1997 GCAATTCAGCGGTTACGCCATAGGCTTTCTTGGAGAACAAGGAAAAACAAAATCACCGCA 2056
Query 1914 GTGCAAAGAGATTCTAAGCAACGTAGACAAAGATCTGAAGAGTCTAACAGAAAGCATAGC 1973
||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2057 GTGTAAGGAGATTCTAAGCAACGTAGACAAAGATCTCAAGAGTCTAACAGAAAGCATAGG 2116
Query 1974 TCTTTTAGCCAAATCATTCGAGGAAATCACT-TTGCTCAAATCACTAGACGCCCTCGGAA 2032
|||||||||||||||||||||||||||||| || || |||||||||||||| |||| ||
Sbjct 2117 TCTTTTAGCCAAATCATTCGAGGAAATCACACTT-CTAAAATCACTAGACGCACTCGAAA 2175
Query 2033 AGGCGCTTGCAAAGAGCGACAACACCTCATGGGACATTGAGCTCGGAAAGACACCAAACC 2092
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2176 AGGCGCTCGCCAAGAGCGACAACACCTCATGGGACATTGAGCTCGGGAAGACACCGAACC 2235
Query 2093 CTAGCTTCTCAACCGCGGTGAGCGAACCGGAGAAGATATTAGAAACGTATCTCCAGCATT 2152
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2236 CTAGCTTCTCAACCGCCGTGAGCGAGCCGGAGAAGATTTTAGAAACGTATCTCCAGCATT 2295
Query 2153 GCAGAAGCGTTGCGGATGGAATATTCCGTGTGGAAGAAGGTGGAGAAGAAGAGGTTAAAG 2212
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 2296 GCAGAAGCGTGGCGGATGGACTATTCCGTGTGGAAGAAGATGGAGAAGAAGAGGTTGAAG 2355
Query 2213 TGGATAAGAGTGAGGTTGTGTTGAGTTTGAGTGCATTAGGGTTTTGTGTGGAGAGAATTG 2272
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2356 TGGACAAGAGTGAGGTTGTGTTGAGTTTGTGTGCATTAGGGTTTTGTGTGGAGAGAATTG 2415
Query 2273 GGAAAGAGACAAGAGAGATTGAGGAGATGGTTAAGGAGGTTCTGCAATCGGAGAACCCTT 2332
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||
Sbjct 2416 GGAAAGAGACAAGAGAGATTGAGGAGATGGTTAAAGAGGTTGTGCAATCGGAAAATCCTT 2475
Query 2333 CAAGTCATGTTAACTTGCATGAGATCTCTTGCAAAATACGTTCTTTGTATAAATGA 2388
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 CAAGCCATGTTAACTTGCATGAGATCTCTTGCAAAATACGTTCTTTGTATAAATGA 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118573687290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5