BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320670
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:1... 2772 0.0
> AT2G28830.1 | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12366748-12370684
REVERSE LENGTH=3218
Length=3218
Score = 2772 bits (1501), Expect = 0.0
Identities = 1801/1945 (93%), Gaps = 24/1945 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAATCAGAGAAACACAAGTTAGCGCAAACCTTAATCGATTCAATAAACGAGATC 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 77 ATGGCGAAATCAGAGAAACACAAATTAGCTCAAACCTTAATCGATTCAATAAACGAGATC 136
Query 61 GCTTCAATTTCCGA-TCACCACACGCCGATGAAGAAGCACTGCGGAAACCTCTCTCGGCG 119
|||||||||||||| || | || ||||||||||||||||||| |||||||| |||||
Sbjct 137 GCTTCAATTTCCGATTC-CGTTACACCGATGAAGAAGCACTGCGCTAACCTCTCCCGGCG 195
Query 120 ATTGAAGCTTCTTATTCCTATGTTGGAAGAGATCAGAGACAATCAAGAATCGTCGTCGGA 179
|||| ||||||| ||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 196 ATTGTCGCTTCTTCTTCCTATGTTGGAAGAGATCAGAGACAATCAGGAATCATCTTCGGA 255
Query 180 AGTTGTGAAGGCTTTGTTATCTCTTAAGGAATCGCTTGTTCCTGCTAAAGATTTGCTTTC 239
||| ||||| |||||||||||| ||||| |||||||| ||| |||||| |||||||||||
Sbjct 256 AGTAGTGAATGCTTTGTTATCTGTTAAGCAATCGCTTCTTCATGCTAAGGATTTGCTTTC 315
Query 240 TTTCGTTAGCCAAGTTAGCAAAATTTATCTGGTGTTGGAGAGAGACCAAGTGATGGTTAA 299
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 316 TTTCGTTAGCCATGTTAGCAAAATTTACCTGGTGTTGGAGAGAGATCAAGTGATGGTGAA 375
Query 300 GTTTCAGAAAGTGACGGCTCTATTGGAACAAGCTTTAAGTCGAATCCCTTATGAGAATCT 359
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 ATTTCAGAAAGTGACTTCTCTATTGGAACAAGCTTTAAGTATAATCCCTTATGAGAATCT 435
Query 360 TGAAATTTCAGATGAACTTAAAGAACAGGTTGAGCTTGTTTTAGTTCAGTTAAGAAGAGC 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 436 GGAAATTTCAGATGAACTTAAAGAACAGGTGGAGCTTGTTTTAGTTCAGTTAAGAAGATC 495
Query 420 GATAGGAAAAGGCGGT---GATGTGTATGATGATGAGTTATACAGGGATCTTTTATCTCT 476
| |||||||| ||||| |||||||||||||||||||| || | |||| || |||||||
Sbjct 496 GTTAGGAAAACGCGGTGGCGATGTGTATGATGATGAGTTGTATAAGGATGTTCTATCTCT 555
Query 477 TTACAGTGACATAGGCAGTGTAACGGAGTCTGACATGCTTAGGAGAGTGGCGGAGAAGCT 536
||| |||| | ||| ||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 556 TTATAGTGGTAGAGGTAGTGTAATGGAGTCTGATATGGTTAGGAGAGTGGCGGAGAAGCT 615
Query 537 TCAGTTGATGACTATAACTGACCTTACACAAGAGTCGTTAGCTTTACTTGATATGGTTAG 596
||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct 616 TCAGTTGATGACTATAACTGACCTTACGCAAGAGTCATTGGCTTTACTTGACATGGTTAG 675
Query 597 TTCTAGTGGT-G-GA-GATCCTGGTGAAAGCTTTGAGAAGATGTCGATGGTTCTCAAGAA 653
|||||||||| | || |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 676 TTCTAGTGGTGGTGATGATCCTGGTGAAAGTTTTGAGAAGATGTCTATGGTTCTTAAGAA 735
Query 654 GATTAAGGACTTTGTGCAAACTGATAATCCTAACTTAGATGATGCTCCGA-TGAGACTGA 712
|||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||
Sbjct 736 GATTAAGGACTTTGTGCAAACTTATAATCCTAACTTGGATGATGCTCC-ATTGAGACTGA 794
Query 713 AATCACCGCTTCCGAAGTTACAAGATGGA-GATCAG-GATATGCCAGTGCCGCCTGAAGA 770
||||| |||||||||||| | |||| || |||| | ||||||| | | |||||||||||
Sbjct 795 AATCATCGCTTCCGAAGTCGCGAGAT-GATGATC-GAGATATGCTAATTCCGCCTGAAGA 852
Query 771 TTTCCGTTGTCCAATTTCTCTAGAATTGATGACGGATCCAGTTATTGTTTCTTCAGGGCA 830
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 853 GTTCCGTTGTCCAATATCTCTAGAATTGATGACTGATCCAGTTATTGTTTCTTCAGGGCA 912
Query 831 GACATATGAACGTGAGTGCATTAATAAGTGGCTTGAAGGAGGACACTTGACGTGTCCAAA 890
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 913 GACTTATGAACGTGAGTGCATTAAGAAGTGGCTTGAAGGAGGACACTTGACGTGTCCAAA 972
Query 891 GACGCAAGAGACGCTGACAAGTGATACCGTCACACCAAACTATGTTCTAAGAAGCCTTAT 950
||||||||| ||||||||||| |||| | | |||||||||||||||||||||||||||||
Sbjct 973 GACGCAAGAAACGCTGACAAGCGATATCATGACACCAAACTATGTTCTAAGAAGCCTTAT 1032
Query 951 AGCTCAATGGTGTGAGTCTAATGGCATCGAACCTCCAAAGCGTCCCAACAAT-TCTCAAC 1009
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1033 AGCTCAATGGTGTGAGTCCAATGGCATCGAACCTCCAAAGCGTCCCAAC-ATATCTCAAC 1091
Query 1010 CGAGTAGTAAAGCCTCATCTTCCTCCTCAACCCCTGATGATGAACATAACAAGATTGAAG 1069
|||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1092 CGAGTAGTAAGGCCTCATCTTCGTCGTCAGCCCCTGATGATGAACATAACAAGATTGAAG 1151
Query 1070 AAC-TCTTACTTAAGCTTACATCGCAACACCCTGAAGACCAAAGATCCGCTGCAGGAGAA 1128
||| || |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1152 AACTTC-TACTTAAGCTCACATCGCAACAGCCTGAAGACCGAAGATCTGCTGCAGGAGAA 1210
Query 1129 ATCCGTCTTCTAGCAAAACAAAACAACCATAACCGAGTCGCCATTGCTGCATCAGGCGCG 1188
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1211 ATCCGTCTTCTAGCAAAACAAAACAATCATAACCGAGTCGCCATTGCTGCCTCAGGCGCG 1270
Query 1189 ATCCCTCTTCTGGTGAATCTCCTCACGATATCCAATGACTAC-AGAACTCAAGAACACGC 1247
|||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||
Sbjct 1271 ATCCCTCTTCTGGTGAATCTCCTCACGATATCTAATGACT-CTCGGACTCAAGAACACGC 1329
Query 1248 TGTGACATCGATTCTTAATCTCTCGATATGCCAAGAGAACAAA-GGAAGGATTGTTTATT 1306
|||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1330 TGTGACATCGATTCTTAACCTCTCGATATGTCAAGAGAACAAAGGGAA-GATTGTTTATT 1388
Query 1307 CATGTGGAGCGGTTCCAGGTATTGTTCATGTGCTCCAGAGAGGCAGCATGGAAGCTAGAG 1366
||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1389 CATCTGGAGCAGTTCCAGGTATTGTTCATGTGCTTCAGAAAGGTAGCATGGAAGCTAGAG 1448
Query 1367 AAAACGCAGCAGCTACACTTTTCAGCCTCTCGGTTATAGACGAGAACAAAGTGACAATAG 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAAACGCAGCAGCTACACTTTTCAGCCTCTCGGTTATAGACGAGAACAAAGTGACAATAG 1508
Query 1427 GTGCCGCAGGAGCGATCCCGCCTCTTGTGACCTTGCTGAGCGAAGGATCACAAAGAGGCA 1486
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1509 GTGCCGCAGGAGCGATCCCGCCTCTTGTGACCTTGCTGAGCGAAGGATCACAGAGAGGCA 1568
Query 1487 AAAAAGACGCGGCGACTGCTCTGTTCAATCTCTGCATATTTCAAGGGAACAAAGGAAAAG 1546
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1569 AAAAAGACGCGGCAACTGCTCTGTTTAATCTCTGCATATTTCAAGGAAACAAAGGAAAAG 1628
Query 1547 CTGTGAGAGCCGGTTTAGTTCCCGTGCTAATGAGGTTACTAACAGAACCCGAAAGCGGAA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTGTGAGAGCCGGTTTAGTTCCCGTGCTAATGAGGTTACTAACAGAACCCGAAAGCGGAA 1688
Query 1607 TGGTTGATGAATCACTCGCTATATTAGCCATACTATCAAGTCATCCGGACGGGAAAACAG 1666
||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1689 TGGTTGATGAATCACTCTCGATATTAGCCATACTATCGAGTCATCCGGACGGGAAATCAG 1748
Query 1667 TGGTTGCTGCCTCTGATCCAGTTCCGGTTATGGTAGATTTTATCAGAAGCGGATCACCGC 1726
||||| ||| ||||| ||||||| ||| ||||||||||||| |||||||| |||||||
Sbjct 1749 AGGTTGGAGCCGCTGATGCAGTTCCAGTTCTGGTAGATTTTATAAGAAGCGGGTCACCGC 1808
Query 1727 GAAACAAAGAAAACGCAGCTGCAGTATTGGTGCACTTGTGTTCATGGAATCAGCAGCATT 1786
| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1809 GGAACAAAGAAAACTCAGCTGCGGTATTAGTGCACTTGTGTTCATGGAATCAGCAACATT 1868
Query 1787 TGATTGAAGCTCAGAAATTAGGGATTATG-AGTCTTTTAATAGAAATGGCTGAGAATGGT 1845
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1869 TGATTGAAGCTCAGAAATTAGGGATTATGGA-TCTTTTAATAGAAATGGCTGAGAATGGT 1927
Query 1846 ACTGACAGAGGAAAACGCAAAGCGGCACAGTTACTTAACCGCTTTAGCCGTTTTAACGAC 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 ACTGACAGAGGAAAACGCAAAGCGGCACAGTTACTTAACCGCTTTAGCCGTTTTAACGAC 1987
Query 1906 CAGCAGAAACAACAGTCCGGTTTAG 1930
|||||||||||||| || |||||||
Sbjct 1988 CAGCAGAAACAACACTCTGGTTTAG 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5