BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320713
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glut... 732 0.0
> AT2G29450.1 | Symbols: ATGSTU5, ATGSTU1, AT103-1A, GSTU5 | glutathione
S-transferase tau 5 | chr2:12624586-12625637 REVERSE
LENGTH=934
Length=934
Score = 732 bits (396), Expect = 0.0
Identities = 539/606 (89%), Gaps = 18/606 (3%)
Strand=Plus/Plus
Query 52 GCTCTCAAACTCAAAGGCATAAATTACGATTACGTGGAAGA-AAAGTTTGAGAGCAAAAG 110
||||||||||||||||||||| ||||| ||||||||||| | | | |||| ||||||
Sbjct 141 GCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATA-CTGGAGAACAAAAG 199
Query 111 CTCTTTGCTTCTTGCTCTAAACCCTATTCACAAGAAGGTCCCTGTTCTTGTTCACAATGG 170
| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 200 CCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGTCCACAATGG 259
Query 171 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGACGAGACTTGGCCACACAA 230
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 260 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACAAAA 319
Query 231 TCCCATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGT 290
||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 320 TCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGCTAAACTCGT 379
Query 291 CGATGAACAGATTACGAATGTGGGTTTTGTATCAATGGCAAAAGCGGATGAGAAAGGAAG 350
|||||||||||||| ||| ||||| ||| |||||||||||| ||| || |||||||||||
Sbjct 380 CGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGAGAAAGGAAG 439
Query 351 AGAAGTTTTGGTCGAGCAGATAAGAGAACTAATTATGTATCTCGAGAAAGAACTTGTCG- 409
||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 440 AGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGAACTTGTCGG 499
Query 410 AAAATGATTACTTCGGCGGTAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGA 469
|||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 500 AAAA-GATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGAAGTTTAA 558
Query 470 TTCCGTTTTGTT-GG-GA-AGGCAG--A-GG--T----TTGCAAGTGATTACAGAAGAGA 517
|||||||||||| || || ||| | | || | ||| ||||||||||||| ||||
Sbjct 559 TTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTACAGAGGAGA 618
Query 518 AGTTTCCAGAGTAT-AACAAATGGGTGAAGAATTTGGAGAAGGTTGAGATTGTAAAAGAT 576
|||||||||||| | || | |||||| | |||||||||||||||||||||||| ||||||
Sbjct 619 AGTTTCCAGAGT-TCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 677
Query 577 TGTATTCCACCAAGAGAGAAACATGTTGAACACATGAACTATATGGCAAAGAGAATTAGA 636
||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| | |||
Sbjct 678 TGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 737
Query 637 TCTTCT 642
||||||
Sbjct 738 TCTTCT 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5