BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320719
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29460.1 | Symbols: ATGSTU4, GST22, GSTU4 | glutathione S-tr... 577 6e-164
AT2G29470.1 | Symbols: ATGSTU3, GST21, GSTU3 | glutathione S-tr... 473 7e-133
> AT2G29460.1 | Symbols: ATGSTU4, GST22, GSTU4 | glutathione S-transferase
tau 4 | chr2:12626536-12627678 REVERSE LENGTH=906
Length=906
Score = 577 bits (312), Expect = 6e-164
Identities = 571/693 (82%), Gaps = 30/693 (4%)
Strand=Plus/Plus
Query 3 GGAGAAAGAAGAAGAAGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTCACAT-GTCGGG 61
|||||||||||| || |||||||||||||||||||||||||||||||| || | || | |
Sbjct 84 GGAGAAAGAAGAGGATGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTTAC-TCGTAGAG 142
Query 62 TC-ATGATGGCTCTCAAACTCAAAGGTGTACCATACGAGTACTTGGAAGAAA-ATTTAAT 119
| | ||||||| |||| |||||||| || || |||||||||||||| | || || || |
Sbjct 143 TTGA-GATGGCTTTCAAGCTCAAAGGCGTGCCTTACGAGTACTTGGA-GCAAGATATAGT 200
Query 120 GAACAAGAGTCCTTTGCTTCTTGAGCTTAACCCGGTTCACAAGAAGGTCCCGGTTCTTGT 179
||||||||| ||||||||||| || | || |||||| |||||||||| |||||||||||
Sbjct 201 GAACAAGAGCCCTTTGCTTCTCCAGATAAATCCGGTTTACAAGAAGGTTCCGGTTCTTGT 260
Query 180 CCACAATGGTAAACCAATACTC-GAGTCAAATCTGATACTCGAATACATCGACCAAACAT 238
| |||| || ||| | || || |||||| || |||| ||||||||||||||||||| ||
Sbjct 261 CTACAAAGGGAAAATATTA-TCCGAGTCACATGTGATCCTCGAATACATCGACCAAATAT 319
Query 239 GGACA-AACAATCCAATTCTACCTCAAGATCCGTACGACAAAGCCATGGCTCGGTTCTTG 297
||| | |||||||||||||| ||||||||||| ||||| |||||||||||| |||| |
Sbjct 320 GGA-AGAACAATCCAATTCTTCCTCAAGATCCTTACGAGAAAGCCATGGCTTTATTCTGG 378
Query 298 GCCAAATTCGTTGATGAACAAGTCGCACCAGCAGGGTTCAGGTCTTTGGTGAAAGCCGAG 357
||||| |||||||||||||| || | ||||| || || | |||| ||| ||||| |||
Sbjct 379 GCCAAGTTCGTTGATGAACAGGTTGGACCAGTAGCTTTTATGTCTGTGGCAAAAGCAGAG 438
Query 358 AAAGGAGTAGAGGTTGCAATTGAAG-AGGCTCGAGAACTAATTATGTTTCTTGAGAAGGA 416
|| ||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||
Sbjct 439 AAGGGAGTAGAGGTTGCAATC-AAGGAGGCTCAAGAACTCTTTATGTTTCTTGAGAAGGA 497
Query 417 AGTCACCGGAAAAGATTTCTTTGGAGGCAAGACAATCGG-TTTCTTGGACATGATTGTC- 474
|||||| |||||||||||||| || ||||| ||||| || ||| |||||| || | | |
Sbjct 498 AGTCACTGGAAAAGATTTCTTCGGTGGCAAAACAATTGGATTT-TTGGACTTGGTCG-CA 555
Query 475 GGAAGTATGATTCCGTTTTGTGGAGTTCGAGCATGGGAATTTATGGGTATTGATATGATT 534
||||||||||| ||||||||| | ||||| |||||| |||||| ||||||||||||
Sbjct 556 GGAAGTATGATCCCGTTTTGTCTTGCTCGAGGTTGGGAAGGTATGGGAATTGATATGATT 615
Query 535 CCGGAGGAGAAGTTTCC-G-GCATTAAATAGATGGATCAAGAAGTTGAAT-AAAGTTGAG 591
|| ||||| |||||||| | || | ||| ||||||||||| || ||||| ||| |||||
Sbjct 616 CCAGAGGAAAAGTTTCCAGAGC-T-AAACAGATGGATCAAAAATTTGAAAGAAA-TTGAG 672
Query 592 ATCGTGAGGGAATGTGTACCTCCAAGAGAGGAACATATTAAGCACT-TGAAAAGAAA-T- 648
|||||||| |||||| | ||||| ||||||||||| ||| |||| | |||| |||| |
Sbjct 673 ATCGTGAGAGAATGTATTCCTCCTAGAGAGGAACAAATTGAGCA-TATGAA--GAAAGTT 729
Query 649 GAAGAGAGAGTTAAATCGGCCTATAAGAGACAA 681
| ||| ||| | ||||| ||||| | |||||||
Sbjct 730 GTAGAAAGAATCAAATCAGCCTA-A-GAGACAA 760
> AT2G29470.1 | Symbols: ATGSTU3, GST21, GSTU3 | glutathione S-transferase
tau 3 | chr2:12628541-12629543 REVERSE LENGTH=856
Length=856
Score = 473 bits (256), Expect = 7e-133
Identities = 558/700 (80%), Gaps = 36/700 (5%)
Strand=Plus/Plus
Query 4 GAGAAAGAAGAAGAAGTGAAGCTTCTAGGTTTTTGGGCAAGCCCTTTCACAT-GTCGGGT 62
||||||||||| | ||||||||| |||| | |||||||||||| |||| | || | ||
Sbjct 60 GAGAAAGAAGAGGGTGTGAAGCTTATAGGGTCTTGGGCAAGCCCATTCA-GTCGTAGAGT 118
Query 63 C-ATGATGGCTCTCAAACTCAAAGGTGTACCATACGAGTACTTGGAAGAA-A--ATTT-A 117
| | |||||||||||| || ||||| || || ||||| |||||||| ||| | ||||
Sbjct 119 CGA-GATGGCTCTCAAGCTTAAAGGCGTGCCGTACGATTACTTGGACGAAGATTATTTGG 177
Query 118 ATGAACAAGAGTCCTTTGCTTCTTGAGCTTAACCCGGTTCACAAGAAGGTCCCGGTTCTT 177
|| |||||| || ||||| ||| | || ||||||||| |||| || ||||| ||| ||
Sbjct 178 TTG-TCAAGAGCCCGTTGCTACTTCAACTCAACCCGGTTTACAAAAAAGTCCCTGTT-TT 235
Query 178 -GTCCACAATGGTAAACCAATACTCGAGTCA-AATCTGATACTCGAATACATCGACCAAA 235
|| |||||||||||| | ||| ||||||| || ||||| || ||||||||||||||||
Sbjct 236 GGTTCACAATGGTAAAATATTACCCGAGTCACAA-CTGATCCTTGAATACATCGACCAAA 294
Query 236 CATGGACAAACAATCCAATTCTACCTCAA-GATCCGTACGACAAAGCCATGGCTCGGTTC 294
|||||||||||||||| |||||||| ||| | ||| || ||||||||||||||||| |||
Sbjct 295 CATGGACAAACAATCCTATTCTACCGCAAAG-TCCATATGACAAAGCCATGGCTCGATTC 353
Query 295 TTGGCCAAATTCGTTGATGAACAAGTCGCACC-AGCAGGGTTCAGGTCTTTGGTGAAAGC 353
| ||||||||| || |||||||||||| || | |||| ||||||| |||||||| |
Sbjct 354 TGGGCCAAATTTGTCGATGAACAAGTCACAATGAT-AGGGCTCAGGTCACTGGTGAAATC 412
Query 354 CGAGAA-AGGAGTAGAGGTTGCAATTGAAGAGGCTCGAGAACTAATTATGTTTCTTGAGA 412
||||| || | | || |||||||| ||||| | || ||||||||||||||| |||||||
Sbjct 413 AGAGAAGAGAATT-GACGTTGCAATCGAAGAAGTTCAAGAACTAATTATGTTGCTTGAGA 471
Query 413 AGGAAGTCACCGGAAAAGATTTCTTTGGAGGCA-AGACAATCGGTTTCTTGGACATGATT 471
| || |||| |||||| | || || || || | |||| || || |||||||||||| |
Sbjct 472 ATCAAATCACGGGAAAAAAATTATTCGGCGG-AGAGACGATAGGATTCTTGGACATGGTC 530
Query 472 GTCGGAAGTATGATTCCGTTTTGTGGAGTTCGAGCATGGGAATTTATGGGTATTGATATG 531
|| ||||||||||| ||||||||| || ||| || |||||| |||||| |||||||||
Sbjct 531 GTGGGAAGTATGATCCCGTTTTGTCTAGCTCGGGCTTGGGAAGGTATGGGAATTGATATG 590
Query 532 ATTCCGGAGGAGAAGTTTCC-G-GCATTAAATAGATGGATCAAGAAGTTGAAT-AAAGTT 588
||||| || || |||||||| | || | ||| |||||||||||||| ||||| ||| ||
Sbjct 591 ATTCCAGAAGAAAAGTTTCCAGAGC-T-AAACAGATGGATCAAGAATTTGAAAGAAA-TT 647
Query 589 GAGATCGTGAGGGAATGTGTACCTCCA-AGAGAGGAACATATTAAGCACTTGAAAAGAAA 647
||||||||||||||||| | ||| | |||||| |||||||| ||||| ||| | |||
Sbjct 648 GAGATCGTGAGGGAATGCATTCCTG-ATAGAGAGAAACATATTGAGCACATGATGA-AAA 705
Query 648 T-GAAGAGA-GAGTTAAATCGGCCTATAAGAGACAAACAT 685
| | || || || | ||| ||| ||| | ||||||| |||
Sbjct 706 TTGTAG-GACGAATCAAAGCGGTCTA-A-GAGACAA-CAT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5