BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320744
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29830.1 | Symbols: | Galactose oxidase/kelch repeat superf... 654 0.0
AT2G29820.1 | Symbols: | Galactose oxidase/kelch repeat superf... 614 7e-175
AT2G29610.1 | Symbols: | pseudogene of the F-box protein famil... 267 2e-70
AT2G29810.1 | Symbols: | Galactose oxidase/kelch repeat superf... 239 5e-62
AT2G29860.1 | Symbols: | Galactose oxidase/kelch repeat superf... 213 3e-54
AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 174 1e-42
> AT2G29830.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12730411-12731599 REVERSE LENGTH=1189
Length=1189
Score = 654 bits (354), Expect = 0.0
Identities = 552/644 (86%), Gaps = 28/644 (4%)
Strand=Plus/Plus
Query 351 CAACATCCCTTTACAATTACGCAGAATCCGTCCACTTCGT-CATATCTT-TCCTGGAGCA 408
|||| |||| |||||||||| |||||||||| |||||| | || || || | |||| |||
Sbjct 346 CAACTTCCCATTACAATTACACAGAATCCGTTCACTTCCTCCA-ATGTTAT-CTGGTGCA 403
Query 409 GCTGTGGTCACAATCGAATACAAGATGTATGTAATGGGTGGTACCAATCCCATCGAGTTT 468
|||||||||||||| || |||||||||||||||||||||||| | ||||| | |
Sbjct 404 GCTGTGGTCACAATAGACTACAAGATGTATGTAATGGGTGGT-----T-GCATCG-G-CT 455
Query 469 ACTAATAAACCTG--T-ATCGACTGTGATTGTCATCGACTGCAGATTCCATACGTGG-GG 524
| |||| | |||| | ||||| ||| |||||||||||||||||||||||||| ||| |
Sbjct 456 A-TAATCATCCTGCATCATCGAATGTAATTGTCATCGACTGCAGATTCCATACTTGGAAG 514
Query 525 CAATCTCCCGGATATGCAAAGGGCTCGTTACCATGCAG-CAGCCGGAGTCATTGACGGAA 583
|||||||||||||| |||||||||||| || ||||| || ||||| | ||||||||||
Sbjct 515 -TATCTCCCGGATATGAAAAGGGCTCGTTGCCGTGCAGCCA-CCGGAATAATTGACGGAA 572
Query 584 ACATTTACGTAATCGGAGGTTGCAAGAAACAAGATGATGACTGGGTCGAAGTGTTCAATG 643
||||| || |||||||| |||||||||||||||| ||| ||||| |||||||| |||
Sbjct 573 GGATTTATGTGATCGGAGGCTGCAAGAAACAAGATGCTGATTGGGTTGAAGTGTTTGATG 632
Query 644 TGACGACTGAGACTTGGGCAACTGTGCCTAGTC-AATGCCCTGAA-GATGCTAGTGAGAA 701
|||||||| ||| ||||| |||||||||||| | |||||||| || ||||||| ||||||
Sbjct 633 TGACGACTCAGAGTTGGGAAACTGTGCCTAG-CGAATGCCCT-AACGATGCTAATGAGAA 690
Query 702 TGGAGAGTTTGTTACATATGTGGTGATGCAGGGGAGGATTTTCACTTTGGAGT-TTGGGG 760
|||||||||| |||| ||||||||||||||||||||| |||||| |||||| | ||| |
Sbjct 691 TGGAGAGTTTATTACGTATGTGGTGATGCAGGGGAGGCTTTTCATTTTGGA-TCTTGAGT 749
Query 761 GCTGTTTTGCTTACGAACCAGGACAAGGTTTATGGCAGTCATGGGGTGTTGAAAGTGAGT 820
| |||||| |||||||||||| ||||||||||||| ||||||||| || || ||||||||
Sbjct 750 GTTGTTTTTCTTACGAACCAGTACAAGGTTTATGGGAGTCATGGGATGATGGAAGTGAGT 809
Query 821 TGATGAGATTTTGGAACTCGTCGTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTG 880
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGATGAGATTTTGGCACTCGTCGTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTG 869
Query 881 ATCTGACGTGTACTCTTGGATATCCGATAGTGGTATATATTATCCGAATGAATTGGTTTG 940
|||| |||||| |||||| | |||| |||||||||||| | |||||||||||||||||||
Sbjct 870 ATCTTACGTGTGCTCTTGAACATCCAATAGTGGTATAT-T-ATCCGAATGAATTGGTTTG 927
Query 941 GGGACCTGTGCTGGGTGGATATTCTTATAATTTGCCTATTCTCA 984
| |||||||| |||||| | || || | |||||||||||||||
Sbjct 928 GAGACCTGTGATGGGTGTAGATACTGCTCATTTGCCTATTCTCA 971
Score = 267 bits (144), Expect = 2e-70
Identities = 184/204 (90%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 140 aagaagaagtagagaaTCTTCCGATTCTTCTAGAACTTCCAGAAGATCTCTTCGAAAGAA 199
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||| |
Sbjct 99 AAGAAGAAGTAGAGAATCTTCCGATTCTTCTACAACTTCCAGAAGAACTCATCGCAAGCA 158
Query 200 TCATCGCACACATCCCAAGATCTCATTACCCGTCGCTATCTCTCGTCTCCAGAGCCTTTC 259
|| |||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 159 TCGTCGCACTCATCCCAAGATGTCATTACCCATCGCTATCCCTCGTCTCCAGAGCCTTTC 218
Query 260 GTCACGTAATCACTTCGCATAAACTCTTCGTAACGCGCTCGCTCCTCGGCTTCACCGAAC 319
||||| ||||||||||||| | |||| |||| | |||||| |||||||||||||||||
Sbjct 219 GTCACTTAATCACTTCGCAGGAGCTCTACGTAGCACGCTCGAACCTCGGCTTCACCGAAC 278
Query 320 CGGTTCTTTATGCCTTAATCAGAT 343
|||||||||||||||||||| |||
Sbjct 279 CGGTTCTTTATGCCTTAATCGGAT 302
Score = 161 bits (87), Expect = 1e-38
Identities = 120/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1024 ATTTGGTGCATAGAGATTGCGTTGGAAACACGTCAAGAAAATCAGATTTGGGGGGTGGTT 1083
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1055 ATTTGGTGCGTAGAGATTGCGTTGGAAACACGTCAAGGAGATCAGATTTGGGGGGTGGTT 1114
Query 1084 GAATCAATCTCGCTTGTGTTTAGGGACGAGATGATGATGCCT-TCCATTGAGCTTTGTCG 1142
||||| ||||| |||||| |||||| | ||||| || | | |||||||||||||||
Sbjct 1115 AAATCAGTCTCGATTGTGTCAAGGGACTTGCCGATGAGGCATGT-CATTGAGCTTTGTCG 1173
Query 1143 AACTGTTATGGTTTGA 1158
||||||||||||||||
Sbjct 1174 AACTGTTATGGTTTGA 1189
> AT2G29820.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12728362-12729528 REVERSE LENGTH=1167
Length=1167
Score = 614 bits (332), Expect = 7e-175
Identities = 524/614 (85%), Gaps = 24/614 (4%)
Strand=Plus/Plus
Query 351 CAACATCCCTTTACAATTACGCAGAATCCGTCCACTTCGTCATA-TCTTTCCTGGAGCAG 409
|||| |||| ||| |||||| |||||||||| |||||| | | | | || | ||||||||
Sbjct 339 CAACTTCCCATTAGAATTACACAGAATCCGTTCACTTCCT-ACAGTGTTACTTGGAGCAG 397
Query 410 CTGTGGTCACAATCGAATACAAGATGTATGTAATGGGTGGTACCAATCCCATCGAGTTTA 469
||||||||||||||| ||||||||||||||||||||| ||| | |||||| | ||
Sbjct 398 CTGTGGTCACAATCGGATACAAGATGTATGTAATGGGAGGT----A--CCATCG-GCTT- 449
Query 470 CTAATAAACCTGTATCGACTGTGATTGTCATCGACTGCAGATTCCATACGTGGGGCAATC 529
||| | | ||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 450 -GAATCATCATGTATCGACTGTGATTGTCATCGACTGCAGAAACCATACGTGGAACTATC 508
Query 530 TCCCGGATATGCAAAGGGCTCGTTACCATGCAGCAGCCGGAGTCATTGACGGAAACATTT 589
||||||||||| ||||||||||||||| |||||| ||||||| |||| ||||| ||||
Sbjct 509 TCCCGGATATGAAAAGGGCTCGTTACCGTGCAGCCGCCGGAGAAATTGGCGGAAGGATTT 568
Query 590 ACGTAATCGGAGGTTGCAAGAAACAAGATGATGACTGGGTCGAAGTGTTCAATGTGACGA 649
| || |||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||
Sbjct 569 ATGTGATCGGAGGACGCAAGAAACAAGATGCTGATTGGGTTGAAGTGTTCAATGCGACGA 628
Query 650 CTGAGACTTGGGCAACTGTGCCTAGTCAATGCCCTGAA-GATGCTAGTGAGAATGGAG-A 707
|||||| ||||| ||||||| ||||| ||||||| || |||||||||| |||||||| |
Sbjct 629 CTGAGAGTTGGGAAACTGTGTCTAGTGTATGCCCT-AACGATGCTAGTGCGAATGGAGTA 687
Query 708 GTTTGTTACATATGTGGTGATGCAGGGGAGGATTTTCACTTTGGA--GTTTGGGGGCTGT 765
||| | |||||||||||||||||||||||||||||| ||||||| ||| |||| |||
Sbjct 688 TTTTCT-ACATATGTGGTGATGCAGGGGAGGATTTTCGCTTTGGATCGTT-GGGGT-TGT 744
Query 766 TTTGCTTACGAACCAGGACAAGGTTTATGGCAGTCATGGGGTGTTGAAAGTGAGTTGATG 825
||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 745 TTTGCTTACAAACCAGTACAAGGTTTATGGCAGTCATGGGGTGTTGCAAGTGAGTTGACG 804
Query 826 AGATTTTGGAACTCGTCGTCGTC-TTG--TGTGGTTGGAGATTTGTTGTATGCACTTGAT 882
||||||||| || ||| |||||| || |||| ||||||| ||||||||| || |||||
Sbjct 805 AGATTTTGGCACCCGTTGTCGTCGTTTACTGTGATTGGAGAGTTGTTGTATACAGTTGAT 864
Query 883 CTGACGTGTACTCTTGGATATCCGATAGTGGTATATATTATCCGAATGAATTGGTTTGGG 942
|| |||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||
Sbjct 865 CTTACGTGTTCTCTTGGACATCCGATAGTGGTATAT-T-ATCCGAATGAATCGGTTTGGA 922
Query 943 GACCTGTGCTGGGT 956
|||||||| |||||
Sbjct 923 GACCTGTGATGGGT 936
> AT2G29610.1 | Symbols: | pseudogene of the F-box protein family,
contains Pfam profile PF00646: F-box domain | chr2:12661312-12662417
FORWARD LENGTH=1106
Length=1106
Score = 267 bits (144), Expect = 2e-70
Identities = 192/215 (89%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 770 CTTACGAACCAGGACAAGGTTTATGGCAGTCATGGGGTGTTGAAAGTGAGTTGATGAGAT 829
|||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 567 CTTACGAACCAGTACAAGGTTTATGGGAGTCATGGGGTGAGGAAAGTGAGTTGATGAGAT 626
Query 830 TTTGGAACTC-GTCGTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTGATCTGACG 888
||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 627 TTTGGCACTCGGT-GTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTGATCTTACG 685
Query 889 TGTACTCTTGGATATCCGATAGTGGTATATATTATCCGAATGAATTGGTTTGGGGACCTG 948
||| |||||| | |||| |||||||||||| | ||||||||||||| |||||| ||||||
Sbjct 686 TGTGCTCTTGAACATCCAATAGTGGTATAT-T-ATCCGAATGAATTCGTTTGGAGACCTG 743
Query 949 TGCTGGGTGGATATTCTTATAATTTGCCTATTCTC 983
|| |||||| | || || | ||||||||||||||
Sbjct 744 TGATGGGTGTAGATACTGCTCATTTGCCTATTCTC 778
Score = 161 bits (87), Expect = 1e-38
Identities = 120/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1024 ATTTGGTGCATAGAGATTGCGTTGGAAACACGTCAAGAAAATCAGATTTGGGGGGTGGTT 1083
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 863 ATTTGGTGCGTAGAGATTGCGTTGGAAACACGTCAAGGAGATCAGATTTGGGGGGTGGTT 922
Query 1084 GAATCAATCTCGCTTGTGTTTAGGGACGAGATGATGATGCCT-TCCATTGAGCTTTGTCG 1142
||||| ||||| |||||| |||||| | ||||| || | | |||||||||||||||
Sbjct 923 AAATCAGTCTCGATTGTGTCAAGGGACTTGCCGATGAGGCATGT-CATTGAGCTTTGTCG 981
Query 1143 AACTGTTATGGTTTGA 1158
||||||||||||||||
Sbjct 982 AACTGTTATGGTTTGA 997
> AT2G29810.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12726102-12727253 REVERSE LENGTH=1152
Length=1152
Score = 239 bits (129), Expect = 5e-62
Identities = 451/600 (75%), Gaps = 48/600 (8%)
Strand=Plus/Plus
Query 398 TTCCTGGAGCAGCTGTGGTCACAATCGAATACAAGATGTATGTAATGGGTGGTACCAATC 457
|||||||| | ||||| ||||||||||| ||||||||||||||| | ||||| ||
Sbjct 356 TTCCTGGATCTGCTGTTGTCACAATCGATTACAAGATGTATGTACTCGGTGG-----AT- 409
Query 458 CCATCGAGTTTACTAATAAACCTGTATCGACTGTGATTGTCATCGACTGCAGATTCCATA 517
||||| | || ||| |||||||||||||| ||||||||||||| || ||||||||||
Sbjct 410 TCATCG-GCTT--GAATCAACCTGTATCGACTATGATTGTCATCGATTGTAGATTCCATA 466
Query 518 CGTGGGGCAATCTCCCGGA-TATGCAAAGGG--CTCGTTACCATGCAGCAGCCGGAGTCA 574
||| | | ||||| | ||||||||||| | || | | ||||| || ||||| |
Sbjct 467 CGTATCGTGAGCTCCC-TAGTATGCAAAGGGATCGCGGTGGC--GCAGCCGCGGGAGTGA 523
Query 575 TTGACGGAAACATTTACGTAATCGGAGGTTGCAAGAAACAAGATGATGACTGGGTCGAAG 634
|||| ||||| |||||||||||||||||||||||||||| | || |||| ||||| ||||
Sbjct 524 TTGATGGAAAGATTTACGTAATCGGAGGTTGCAAGAAACGATATAATGATTGGGTTGAAG 583
Query 635 TGTTCAATGT-GACGACTGAGACTTGGGCAACTGTGCCTAGTCAATGCCCTGAA-GATGC 692
||||| |||| || || ||||| ||||| |||||||||| ||| || |||| || | |||
Sbjct 584 TGTTCGATGTAGA-GAATGAGAGTTGGGAAACTGTGCCTGGTCCATACCCT-AACGTTGC 641
Query 693 TAGTGAGAATGGAGAGTTT-GTTACATATGTGGTGATGCAGGGGAGGATTTTCACTTTGG 751
||||||| || ||||||| || | ||||| ||| ||| | || ||||| || |||||
Sbjct 642 AAGTGAGAGTGTAGAGTTTAGTCA-ATATGCGGTAATGGAACAGAAGATTTACATTTTGG 700
Query 752 AGTT-TGGGGGCTGTTTTG-CTTACGAACCAGGACAAGGTTTATG-GCAGTCATGGGGT- 807
| | | | ||||| | ||||||||||| || || || || | || |||||||
Sbjct 701 A-TCCTCTGTTTTGTTT-GACTTACGAACCAAGAAAACGTAGATTTG-AGGCATGGGGAC 757
Query 808 GTTGAAAGTGAGTTGATGAGATTTTGGAACTCGTCGTCGTCTTGTGTGGTTGGA-GATTT 866
|| ||| || | || | || || || ||||| || | |||||||| | ||| |
Sbjct 758 GTAGAA-GTCAACAGA-G-GA----GGTACGAGTCGT-GT-T-GTGTGGTTA-ATGATAT 806
Query 867 GTTGTATGCAC-TTGAT-CTGACGTGTACTCTTGGATATCCGATAGTGGTATATATTATC 924
||||| | | | ||||| || |||||| ||| |||||||||||| || || ||| |||
Sbjct 807 GTTGTGTAC-CGTTGATTCT-ACGTGTTCTCATGGATATCCGATTGTCGTGTATG--ATC 862
Query 925 CGAATGA-ATTGGTTTGGGGACCTGTGCTGGGTGGATATTCTTATAATTTGCCTATTCTC 983
| || | || ||||||| |||||||| ||||| | | || | ||||||||| ||||
Sbjct 863 CAAAGGGTAT-GGTTTGGAGACCTGTGAAGGGTGTACAAAGTTCTGATTTGCCTAATCTC 921
> AT2G29860.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12737666-12738388 REVERSE LENGTH=723
Length=723
Score = 213 bits (115), Expect = 3e-54
Identities = 157/178 (88%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 171 AGAACTTCCAGAAGATCTCTTCGAAAGAATCATCGCACACATCCCAAGATCTCATTACCC 230
||||||||||||||| ||| ||||||| || | |||| ||||||||||| | |||||||
Sbjct 63 AGAACTTCCAGAAGAACTCATCGAAAGCATTGTTGCACCCATCCCAAGATGTTATTACCC 122
Query 231 GTCGCTATCTCTCGTCTCCAGAGCCTTTCGTCACGTAATCACTTCGCATAAACTCTTCGT 290
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 GTCGCTATCTCTCCTCTCCAGAGCCTTTCGTCACGTAATCACTTCGCAGCAACTCTTCGT 182
Query 291 AACGCGCTCGCTCCTCGGCTTCACCGAACCGGTTCTTTATGCCTTAATCAGATGCACA 348
||| |||||| |||||| || | |||||||||||||||||||| ||| ||||||||
Sbjct 183 AACTCGCTCGGGCCTCGGTTTTAAGGAACCGGTTCTTTATGCCTTCATCGGATGCACA 240
> AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12655151-12657296 FORWARD LENGTH=2057
Length=2057
Score = 174 bits (94), Expect = 1e-42
Identities = 162/194 (84%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 486 GACTGTGATTGTCATCGACTGCAGATTCCATACGTGGGGCAATCTCCCGGATATGCAAAG 545
||||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||| |
Sbjct 1038 GACTGTGTTTGTCATCGACTGCAGATTCCATACGTGGCGCTATCTCCAGGAGATGCAA-G 1096
Query 546 -GGCTCGTTACC-ATGCAGCAGCCGGAGTCATTGACGGAAACATTTACGTAATCGGAGGT 603
|||||||| || | ||||| | | ||| |||||||||| |||||||| | ||||||
Sbjct 1097 TGGCTCGTT-CCTACGCAGCTTCTGCAGTGATTGACGGAATGATTTACGTGGTGGGAGGT 1155
Query 604 TGCAAGAAAC-AAGATGATGACTGGGTCGAAGTGTTCAATGT-GACGACTGAGACTTGGG 661
| || |||| ||| |||||| |||||||||||||||||||| || |||| | |||||||
Sbjct 1156 TCCACTAAACGAAG-TGATGATTGGGTCGAAGTGTTCAATGTAGA-GACTAATACTTGGG 1213
Query 662 CAACTGTGCCTAGT 675
|| ||||||||||
Sbjct 1214 AAAATGTGCCTAGT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5