BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320761
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30080.1 | Symbols: ZIP6, ATZIP6 | ZIP metal ion transporter... 1517 0.0
> AT2G30080.1 | Symbols: ZIP6, ATZIP6 | ZIP metal ion transporter
family | chr2:12838730-12840112 REVERSE LENGTH=1026
Length=1026
Score = 1517 bits (821), Expect = 0.0
Identities = 962/1027 (94%), Gaps = 22/1027 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTGCGTCACCGGAACAGAGGCGGCGATAC-GAGCCGCGGCTTGTAGAGACGG 59
||||||||||||||||||||||||||||| || || | |||| ||||| |||||||||||
Sbjct 1 ATGGCTTCTTGCGTCACCGGAACAGAGGCAGCAAT-CAGAGCAGCGGCATGTAGAGACGG 59
Query 60 CGACGCAGCCTCTCATCTAAAGATAGTCGCCGTCTTCGCCATCTTTCTCACTAGTGTTTT 119
||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 60 CGAAGAAGCCTCTCATCTAAAGATAGTCGCCGTCTTCGCCATCTTTCTCACAAGCGTTTT 119
Query 120 CGGTGTTTGGGGACCGGTTATACTCGCTAAATACTTTCACGGTAAATCTCTCTACGATAA 179
||| ||||||||||| ||| ||||||||||||||||||| |||||| |||| ||||||||
Sbjct 120 CGGAGTTTGGGGACCAGTTTTACTCGCTAAATACTTTCATGGTAAACCTCTGTACGATAA 179
Query 180 AGCGATTCTTGTGATAAAGTGTTTCGCCGCCGGCGTTATTCTCTCGACGTCTTTAGTCCA 239
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AGCAATTCTTGTGATAAAGTGTTTCGCCGCCGGCGTGATTCTCTCGACGTCTTTAGTCCA 239
Query 240 CGTGTTACCGGAAGCATTTGAGTCACTCGCTGATTGCCAAGTGTCGTCACGTCATCCGTG 299
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CGTTTTACCGGAAGCGTTTGAGTCACTCGCTGATTGCCAAGTGTCGTCACGTCATCCATG 299
Query 300 GAAAGATTTTCCGTTTGCTGGTTTGGTTACGATGATCGGAGCTATAACGGCTTTGTTGGT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAGATTTTCCGTTTGCTGGTTTAGTTACGATGATCGGAGCTATAACGGCTTTGTTGGT 359
Query 360 TGATTTAACGGCGAGTGAACATATGGGACAC---GGTGGTGGTGGT-G-G-CGGAGAAAT 413
||||||||||||||||||||||||||||||| |||||||||||| | | ||||| ||
Sbjct 360 TGATTTAACGGCGAGTGAACATATGGGACACGGTGGTGGTGGTGGTGGTGACGGAGGGAT 419
Query 414 GGAGTATA----------T--GGCGGTTGGGGGGTTAGAAATGAAAGAAGGAAAGTTTGG 461
|||||||| | ||||||||| ||||||||||||||||||||||||| |||
Sbjct 420 GGAGTATATGCCGGTGGGTAAGGCGGTTGGAGGGTTAGAAATGAAAGAAGGAAAGTGTGG 479
Query 462 GGCTGATTTGGAAATACAAGAAAATAGTGAGGAGGAAATTGTGAAGATGAAACAAAGATT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCTGATTTGGAAATACAAGAAAATAGTGAGGAGGAAATTGTGAAGATGAAACAAAGATT 539
Query 522 AGTGTCACAAGTTCTTGAAATTGGGATAATATTTCATTCGATGATTATTGGAGTAACTTT 581
||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| |
Sbjct 540 AGTGTCACAAGTTCTTGAAATAGGGATTATATTTCATTCGGTGATAATTGGAGTAACAAT 599
Query 582 GGGAATGTCACAAAATAAGTGTACCATTAGACCTTTGATTGCTGCACTTTCGTTTCATCA 641
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 GGGAATGTCACAAAATAAGTGTACCATTAGACCTTTGATTGCTGCGCTTTCTTTTCATCA 659
Query 642 GATTTTTGAAGGTTTGGGTCTTGGTGGTTGCATTGCTCAGGCTGGGTTTAAGGCAGGGAC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATTTTTGAAGGTTTGGGTCTTGGTGGTTGCATTGCTCAGGCTGGGTTTAAGGCAGGGAC 719
Query 702 AGTGGTTTATATGTGCTTGATGTTCGCGGTAACGACGCCTCTCGGGATTGTACTAGGGAT 761
|||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 720 AGTGGTGTATATGTGCTTAATGTTCGCGGTAACAACGCCACTCGGGATTGTACTAGGGAT 779
Query 762 GGTGATATTTGCAGCGACCGGATACGATGATCAGAACCCGAATGCATTGATAATGGAGGG 821
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 780 GGTGATATTTGCAGCGACCGGGTACGATGATCAGAACCCGAACGCATTGATAATGGAGGG 839
Query 822 TTTATTGGGATCATTCTCTTCAGGTATTCTAATATACATGGCCTTGGTTGATCTAATTGC 881
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TTTATTGGGATCATTCTCTTCAGGTATTCTAATATACATGGCCTTGGTTGACCTAATTGC 899
Query 882 ATTGGATTTCTTCCATAACAAGATGTTGACGACA-GCCGGTGAATCGGGTTCTCGGCTCA 940
||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||
Sbjct 900 ATTGGATTTCTTCCATAACAAGATGCTGACGACTTGC-GGTGAATCGGGTTCTCGCCTCA 958
Query 941 AGAAGCTCTGTTTTGTGGCTTTGGTTTTAGGTTCTGCCTCTATGTCACTACTTGCTCTTT 1000
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAAGCTTTGTTTTGTGGCTTTGGTTTTAGGTTCTGCCTCTATGTCACTACTTGCTCTTT 1018
Query 1001 GGGCTTA 1007
|||||||
Sbjct 1019 GGGCTTA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5