BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320775
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family... 1626 0.0
AT2G30310.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family... 1264 0.0
> AT2G30220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family
protein | chr2:12891266-12892537 REVERSE LENGTH=1077
Length=1077
Score = 1626 bits (880), Expect = 0.0
Identities = 1014/1077 (94%), Gaps = 15/1077 (1%)
Strand=Plus/Plus
Query 1 ATGTGTATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTATATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
Query 61 AATGCGGATGCAAACGCCACGCAGCGGCTTTTCCCGGCGATTCTAATCTTCGGCGACTCA 120
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 61 AATGCGGATGCAAACACCACGCAGCCGCTTTTCCCGGCGATTCTAATATTCGGCGACTCA 120
Query 121 ACGGTAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCACCTC 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGCAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCACCTC 180
Query 181 CCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAATGGGAGATTCTCAAACGGAAAGCTA 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 CCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAACGGAAGATTCTCAAACGGAAAGCTA 240
Query 241 ATCTCTGACGTAATCTCCACCAAACTCAACATCAAAGAGTTTGTTCCTCCGTTTCTACAG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTCTGACGTAATCTCCACAAAACTCAACATCAAAGAGTTTGTTCCTCCGTTTCTACAA 300
Query 301 CCAAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCCGGTGCTGGC 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CCGAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCGGGTGCTGGC 360
Query 361 TACGATGACGAGACCTCGCTATCGAGCAAGGCTATCCCGGTCTCACAACAGCCACGCATG 420
||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||
Sbjct 361 TACGATGACGAGACCTCACTATCTAGCAAAGCTATTCCGGTCTCACAACAGCCAAGCATG 420
Query 421 TTCAAGAATTATATTGCTCGTCTCAAACGTATCGTAGGAGACAAGAAAGCAATGAACATA 480
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 421 TTCAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCGATGGAGATT 480
Query 481 ATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAACTTTTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAACTTTTAC 540
Query 541 GATATCCCCACAAGGCATCTCGAGTATCCTACTATCTATGGTTACCAAGATTTTGTCCTC 600
|||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 541 GATATCCCCATAAGGCGTCTCGAGTATCCTACTATCTATGGCTACCAAGATTTTGTTCTC 600
Query 601 AAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTTGGTTGCCGGAATATTCTAGTC 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 AAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGGAATATTCTAGTC 660
Query 661 GGAGGGTTGCCGCCGATGGGATGTTTACCGATCCAAATGACCGTGAAAATGAGAAGCATT 720
|||||||||||||| ||||||||||||||||||||| |||||| |||| |||||| ||||
Sbjct 661 GGAGGGTTGCCGCCAATGGGATGTTTACCGATCCAATTGACCGCGAAATTGAGAACCATT 720
Query 721 T-G----T--GTG-G-AACAAGAGAACAAAGACTCCGTTTTGTACAATCAAAAACTAGTA 771
| | | ||| | ||||||| |||||||||||| ||||||||||||| || || |||
Sbjct 721 TTGGGAATTTGTGTGGAACAAGAAAACAAAGACTCCATTTTGTACAATCAGAAGCTTGTA 780
Query 772 AAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGCTAACATC 831
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 AAGAAATTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGCTAACGTC 840
Query 832 TACGACCCTGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGGAGACGAAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TACGACCCTGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGGAGACGAAG 900
Query 892 ACAGGATGTTGCGGAACAG--T----GGAAACGAGCTTCTTGTGCAATTCCTTATCAAAG 945
| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||||||
Sbjct 901 AAAGGATGTTGCGGAACAGGATACTTGGAAACAAGCTTCTTGTGCACTTCCTTGTCAAAG 960
Query 946 ACTTGTCCGAATCATTCAGATCATTTGTTTTGGGACTCCATTCACCCCTCCGAAGCAGCT 1005
||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 961 ACTTGTCCGAATCATTCGGATCACTTGTTTTGGGACTCCATTCATCCCTCCGAGGCAGCT 1020
Query 1006 TACAAATACCTAGGGAACTTCATAGATGCTCAGATTCATGAGTGGCTTAAGGCTTAA 1062
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1021 TACAAATACCTAGGGAACTTCATAGATGCTCAGATTCAAGAGTGGCTTAAGACTTAA 1077
> AT2G30310.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family
protein | chr2:12923055-12924380 FORWARD LENGTH=1089
Length=1089
Score = 1264 bits (684), Expect = 0.0
Identities = 959/1088 (88%), Gaps = 34/1088 (3%)
Strand=Plus/Plus
Query 1 ATGTGTATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
|||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGTCTACATCTAAAACCATAGTGTTTGGTCTCTTTGTCGCAACACTCCTCGTCTCTTGC 60
Query 61 AATGCGGATGCAAACG-C-C-ACGCAGCGGCTTTTCCCGGCGATTCTAATCTTCGGCGAC 117
|||| || |||||||| | | ||||||| ||||||||| ||||||||||||||||| |||
Sbjct 61 AATGTGGCTGCAAACGCCACAACGCAGCCGCTTTTCCCAGCGATTCTAATCTTCGGTGAC 120
Query 118 TCAACGGTAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCAC 177
||||| |||||||||||||| ||||||||| | |||||| || ||||||||||||| ||
Sbjct 121 TCAACCGTAGACACAGGCAACAACAACTACCATTCACAAACCATCTTCAAGGCTAAGCAT 180
Query 178 CTCCCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAATGGGAGAT-TCTCAAACGG-AA 235
|||||||| ||||||||||| || ||||| |||||||| || |||| | ||||| || ||
Sbjct 181 CTCCCTTACGGCGTTGATCTACCGGGCCATGAAGCTAACGGAAGATAT-TCAAATGGAAA 239
Query 236 AGCTAATCTCTGACGTAATCT-CCACCAAACTCAACATCAAAGAGTTTGTTCCTCCGTTT 294
|| ||||||||||||| || | | |||||||||||||||||||||| ||||||||||||
Sbjct 240 AG-TAATCTCTGACGTCAT-TGCTTCCAAACTCAACATCAAAGAGTTGGTTCCTCCGTTT 297
Query 295 CTACAGCCAAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCCGGT 354
||||| |||||||||||| ||||||||||||||||||| |||| ||| |||||||| |||
Sbjct 298 CTACAACCAAACATCTCCCACCAAGACATTGTCACTGGCGTCTCTTTCGCATCCGCGGGT 357
Query 355 GCTGGCTACGATGA-CGAGACCTCGCTATCGAGCAAGGCTATCCCGGTCTCACAACAGCC 413
|| ||||||||||| || || ||| || |||||||| || ||||||||||||||||||||
Sbjct 358 GCGGGCTACGATGACCG-GAGCTCACTCTCGAGCAAAGCAATCCCGGTCTCACAACAGCC 416
Query 414 ACGCATGTTCAAGAATTATATTGCTCGTCTCAAACGTATCGTAGGAGACAAGAAAGCAAT 473
| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 AAGCATGTTTAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCAAT 476
Query 474 GAACATAATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAA 533
| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 GGAGATCATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAACGATTTCATCTTGAA 536
Query 534 CTTTTACGATATCCCCACAAGGCATCTCGAGTATCCTACTATCTATGGTTACCAAGATTT 593
|||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||||||| ||
Sbjct 537 CTTTTATGATATCCCCACGAGGCGTCTTGAGTATCCTACTATCCATGGTTACCAAGAGTT 596
Query 594 TGTCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTTGGTTGCCGGAATAT 653
| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 597 TATCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGAAATAT 656
Query 654 TCTAGTCGGAGGGTTGCCGCCGATGGGATGTTTACCGATCCAAATGACCGTGAAAATGAG 713
| | ||||||||||| || || |||||||||||||| ||||||||||||| |||||||||
Sbjct 657 TGTGGTCGGAGGGTTACCACCAATGGGATGTTTACCAATCCAAATGACCGCGAAAATGAG 716
Query 714 AAGCATTT-G---T---GTG-G-AACAAGAGAACAAAGACTCCGTTTTGTACAATCAAAA 764
|| ||||| | | ||| | ||||||| |||||||||||||||||||||||||| ||
Sbjct 717 AAACATTTTGAGATTTTGTGTGGAACAAGAAAACAAAGACTCCGTTTTGTACAATCAGAA 776
Query 765 ACTAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGC 824
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 777 ACTAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCGGGAAGCAATTTCCTTTACGC 836
Query 825 TAACATCTACGACCC-TGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGG 883
||| |||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 837 CAACGTCTACGACCCAT-TGATGGACATGATCCAAAACCCTAGTAAATACGGATTCAAGG 895
Query 884 AGACGAAGACAGGATGTTGCGGAACAG--T----GGAAACGAGC-TTCTTGTGCAATTCC 936
|||| |||| ||||||||||||||||| | |||||| | | ||| |||||||| ||
Sbjct 896 AGACTAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACAA-CATTCATGTGCAATCCC 954
Query 937 -TTATCAAAGACTTGTCCGAATCATTCAGATCATTTGTTTTGGGACTCCATTCACCCCTC 995
||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 955 CTTA-CAAAGACTTGTCCGAATCACTCCGATCACTTGTTTTGGGACTCAATTCATCCCTC 1013
Query 996 CGAAGCAGCTTACAAATACCTAGGGAACTTCATAGATGCTCAGATTC-ATGAGTGGCTTA 1054
||||| || ||||| ||| | || ||||| | ||||||||||||| | | ||| |||
Sbjct 1014 GGAAGCTGCCTACAATTACATTGGCAACTTTGTGGATGCTCAGATTCGAGGC-TGGATTA 1072
Query 1055 AGGCTTAA 1062
||||||||
Sbjct 1073 AGGCTTAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5