BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320780
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprote... 1122 0.0
AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 621 3e-177
> AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein
B | chr2:12905402-12907509 REVERSE LENGTH=929
Length=929
Score = 1122 bits (607), Expect = 0.0
Identities = 669/699 (96%), Gaps = 4/699 (1%)
Strand=Plus/Plus
Query 1 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAACCTCAACGAAAAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 76 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAACCTCAACGAAAGG 135
Query 61 ATCAAGAAAGAAGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGATA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ATCAAGAAAGAGGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGATA 195
Query 121 CTTGATGTGGTTGCTTTGAAGACTCCGAAACTCCGTGGACAAGCTTGGGTTACATTTAGT 180
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 196 CTTGATGTGGTTGCTTTGAAGACTCCGAAGCTCCGAGGACAAGCTTGGGTTACTTTTAGT 255
Query 181 GAAGTCACAGCTGCTAG-CAATGCCGTTCGTCAGATGCAAAATTTCCCCTTCTACGATAA 239
|||||||| |||||| | || ||| |||||||||||||||||||| |||||||| |||||
Sbjct 256 GAAGTCACTGCTGCTGGTCA-TGCTGTTCGTCAGATGCAAAATTTTCCCTTCTATGATAA 314
Query 240 GCCAATGCGCTTACAATACGCAAAAGCAAAGTCAGATTGTCTAGCTAAAGCCGAGGGAAC 299
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 315 ACCAATGCGCTTACAATATGCAAAAGCAAAGTCAGATTGTCTAGCTAAAGCTGAGGGAAC 374
Query 300 TTTCATTCCaaaagataagaagaggaagcaagaagaaaaagttgaaagaaagcgtgaaga 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTTCGTTCCAAAAGATAAGAAGAGGAAGCAAGAAGAAAAAGTTGAAAGAAAGCGTGAAGA 434
Query 360 aTCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGTGCCAATAATGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 435 TTCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGTGCCAATAACGG 494
Query 420 AGTCCCTGCGCCATCCTTCCCA-CCGAGCGGGCAAGAAGCGATGCCACCAAACAACATAC 478
|||||||||||| || |||| | ||||||||||||||| | |||||||||||||||||||
Sbjct 495 AGTCCCTGCGCCTTCGTTCC-AGCCGAGCGGGCAAGAAACAATGCCACCAAACAACATAC 553
Query 479 TCTTCATTCAGAATCTCCCACACGAGACAACAAGCATGATGCTTCAGCTTCTCTTCGAAC 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 TCTTCATTCAGAATCTCCCACACGAGACAACAAGCATGATGCTACAGCTTCTCTTCGAAC 613
Query 539 AATACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTGG 598
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 614 AGTACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGGAATCGCGTTTGTAG 673
Query 599 AGTATGAAGACGATGTTCAAGCTTCCATAGCTATGCAACCTCTTCAAGGTTTCAAAATCA 658
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGTACGAAGATGATGTTCAAGCTTCCATAGCTATGCAACCTCTTCAAGGTTTCAAAATCA 733
Query 659 CTCCCCAGAATCCAATGGTCATCTCTTTTGCCAAGAAAT 697
|||||||||||||||||||||||||||| ||||||||||
Sbjct 734 CTCCCCAGAATCCAATGGTCATCTCTTTCGCCAAGAAAT 772
> AT1G06960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2135852-2137702 FORWARD LENGTH=937
Length=937
Score = 621 bits (336), Expect = 3e-177
Identities = 594/712 (83%), Gaps = 43/712 (6%)
Strand=Plus/Plus
Query 1 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAAC--CTCAACGAAA 58
||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||| || |
Sbjct 79 ATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACAT--AAAACATATCAATGAGA 136
Query 59 AGATCAAGAAAGAAGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGA 118
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |
Sbjct 137 AGATCAAGAAAGAAGAGCTGAAGAGGTCTCTTTACTGTTTGTTCTCTCAGTTTGGAAG-A 195
Query 119 T-ACTTGATGTGGTTGCTTTGAAGACTCCGAAACTCCGTGGACAAGCTTGGGTTACATTT 177
| ||||||||||||||| || |||||||| || ||||| |||||||| |||||| |||
Sbjct 196 TTACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGACAAGCATGGGTTGTTTTT 255
Query 178 AGTGAAGTCACAGCTGCTAGCAATGCCGTTCGTCAGATGCAAAA-TTTCCCCTTCTACGA 236
| ||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| ||
Sbjct 256 ACTGAAGTCACCGCTGCTAGCAACGCTGTCCGTCAGATGCAGAACTTTCCT-TTCTATGA 314
Query 237 TAAGCCAATGCGCTTACAATACGCAAAAGCAAAGTCAGATTGTCT-AGCTAAAGCCGA-G 294
|||||| ||||| ||||||| |||||| |||||||||||| | | | |||||||||| |
Sbjct 315 TAAGCCTATGCGGATACAATATGCAAAATCAAAGTCAGATTATGTTA-CTAAAGCCGAAG 373
Query 295 GGAACTTTCATTCCaaaagataagaagaggaagcaagaagaaaaagttgaaagaaagcg- 353
|| |||| |||||||||| ||||||| |||||||||||| ||||||||||| |||||
Sbjct 374 GGT-CTTTTGTTCCAAAAGAAAAGAAGATGAAGCAAGAAGAGAAAGTTGAAAGGAAGCGA 432
Query 354 --tg---aagaaTCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGT 408
|| ||||| | |||| ||||| || | |||||||| ||| ||| | | | |
Sbjct 433 CATGCTGAAGAAACTCAACAACCAAGCATGCCTAATGGCGCAA---CTACT---C-A-G- 483
Query 409 GCCAATAATGGAGTCCCTGCGCCATCCTTCCCA-CCGAGCGGGCAAGA-AGCGATGCCAC 466
|| ||| | |||| ||| ||||| ||| ||||| |||||||| | |||||||||
Sbjct 484 ---AAC---GGAATGCCTGTGCC-TCCTTTCCAGCCGAGTGGGCAAGACA-CGATGCCAC 535
Query 467 CAAACAACATACTCTTCATTCAGAATCT-CCCACACGAGAC-AACAAGCATGATGCTTCA 524
|||||||||||||||||||||| ||||| |||| ||||| || | | |||||||||||
Sbjct 536 CAAACAACATACTCTTCATTCATAATCTTCCCATT-GAGACGAATA-GTATGATGCTTCA 593
Query 525 GCTTCTCTTCGAACAATACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGG 584
||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 594 GCTGCTCTTTGAGCAATACCCAGGATTCAAAGAGATAAGAATGATCGAAGCAAAACCCGG 653
Query 585 AATCGCGTTTGTGGAGTATGAAGACGATGTTCAAG-CTTCCATAGCTATGCAACCTCTTC 643
||| ||||||||||||||||||||||||||||| | ||||||| || ||||| ||||||
Sbjct 654 AATTGCGTTTGTGGAGTATGAAGACGATGTTCA-GTCTTCCATGGCCATGCAGGCTCTTC 712
Query 644 AAGGTTTCAAAATCACTCCCCAGAATCCAATGGTCATCTCTTTTGCCAAGAA 695
| |||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 713 AGGGTTTCAAGATCACTCCGCAGAATCCAATGGTCGTCTCTTTTGCCAAGAA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5