BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320784
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30300.1 | Symbols: | Major facilitator superfamily protein... 2344 0.0
> AT2G30300.1 | Symbols: | Major facilitator superfamily protein
| chr2:12919401-12921222 FORWARD LENGTH=1503
Length=1503
Score = 2344 bits (1269), Expect = 0.0
Identities = 1427/1505 (95%), Gaps = 4/1505 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTGAAGTTTCTCCCGTGGTTGAGCCTAGTCGCTCTTCTTTGGCTTCAATCTTTC 60
||||||| |||| |||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 1 ATGTCTCGGAAGATTCTCCCGTGGTTGAGTCTAGTCGCTATTCTCTGGCTTCAATCTTTC 60
Query 61 AATGGCACCAACTTGAGTTTCCCTGCTTATTCTTCACAGCTTAAAGAGTTTCTCAAAATC 120
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 61 AATGGCACCAACTTGAGTTTCCCAGCTTACTCTTCACAGCTTAAAGAGCTTCTCAAAATC 120
Query 121 TCTCAGTTTAAGCTTAATTATCTCTCTTTCGCCTCTGACGCTGGAAAAGTCCTAGGTTTT 180
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCCCAGTTTAAGCTAAATTATCTTTCTTTCGCCTCCGACGCTGGAAAAGTCCTAGGTTTT 180
Query 181 ATCTCCGGTATCGCCGCCGTTTATCTTCCTCTTCCTCTTGTCCTTCTTGCCGGAGGTTCA 240
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 ATCTCCGGTATCGCCGCCGTTTATCTTCCTCTCCCTCTTGTCCTTCTCGCCGGAGGTTCA 240
Query 241 TTAGGGTTTGCCGGCTACGGTCTCCAGTATCTCTCCATCGTCAGGAAGATTATCTGTTGG 300
|||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 241 TTAGGGTTCGCCGGCTACGGTCTCCAGTATCTCTCCATCATCAAGAAGATTATCTGTTGG 300
Query 301 ATCAACACAGCTTGTTACATCGTCGCAATCAACAGTTTTCCGGTGAACCGTCAAGTCGCC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ATCAACACAGCTTGTTACATCGTCGCAATCAATAGTTTTCCGGTGAACCGTCAAGTCGCC 360
Query 361 GTGGGGATCACGGCAAGTTATCAAGGTTTGAGTGGAAAAATCTACACCGACATGGTCCAC 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTGGGGATCACGGCAAGTTATCAAGGTTTGAGTGGGAAAATCTACACCGACATGGTCCAC 420
Query 421 ACTTTGTTTCACACGTCTCAACGCGAAGAAGCTTCGGGTTATCTCTTGCTTAACTCTCTA 480
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 421 TCTTTTTTTCACACGTCTCAACGTGAAGAAGCTTCGGGTTATCTCTTGCTCAACTCTCTT 480
Query 481 GTTCCATTGGTCGCTTGTCTCGTGACGGCTCCTATGTTGATGAGACACGGAGGAGACAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCCATTGGTCGCTTGTCTCGTGACGGCTCCTATGTTGATGAGACACGGAGGAGACAAA 540
Query 541 ACGACGTCGTTTTCT-GGTGATGTTAAAGTCGGTTTCATCGTTTTGTTCGTCCTGACTAT 599
|||| ||||| |||| | ||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 541 ACGATGTCGTATTCTAAG-GATGTTAAAGTTGGTTTTATCGTTTTGTTCGTCTTGACTAT 599
Query 600 AGCCACGGGGATTTACGCCGTGGCTACGAGTCTTGTCTCGGCTCCTGCGGTTTTAGTTCT 659
|| ||||||||||| || |||||||||||||||||||||| ||||||||||||||| ||
Sbjct 600 TGCTACGGGGATTTATGCGGTGGCTACGAGTCTTGTCTCGGTTCCTGCGGTTTTAGTACT 659
Query 660 TGTAGGCATTGCTCTGTTTCTTCTTGCTCCTCTTGCTATACCAATTGGAGTTGGATTGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TGTAGGCATTGCTCTGTTTCTTCTTGCTCCTCTTGCTATACCAATTGGAGTTGGATTTAA 719
Query 720 AGAGCTCATGTCCTCTAGAAAAACTCAACAAAAGGTACAAGATCTTGAAGCTCCTCCCGA 779
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 720 AGAGCTTATGTCCTCTAGAAAAACTCAACAAAAGGTGCACGATCTTGAAGCTCCTGTCGA 779
Query 780 TAAATTTTATTTCgaagaagaagatcacacgaaagaagaagaagagtttgagaaggaaat 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 TAAATTTTATTTCGTAGAAGAAGATCACACGAAAGAAGAAGAAGAGTTTGAGAAGGCAAT 839
Query 840 aattggagttaaagaagagGTCGAGTGGACACAACTATGGAAGAAACTCGATTTTTGGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATTGGAGTTAAAGAAGAGGTCGAGTGGACACAACTATGGAAGAAACTCGATTTTTGGAT 899
Query 900 ATATTTTGGACTTTATTTGTTCGGTCCAACCGTCGGGCTAGTGTTTATGAATAATCTTGG 959
||| |||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 900 ATACTTTGGACTCTATTTGTTCGGTCCAACGGTCGGGCTAGTGTTTACGAACAATCTTGG 959
Query 960 TCAGATCGCTGAGTCTCGTGGCTCCACCGCGACCAGTTCCTTGGTCGCTCTCTCGTCGTC 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 TCAGATCGCTGAGTCTCGTGGCTCCACCGCCACCAGTTCCTTGGTCGCTCTCTCGTCGTC 1019
Query 1020 GTTCGGGTTTTTCGGCCGCTTGCTT-CCTTCGTTACTCGACTATTTCTTCTCTAGGAACA 1078
|||||||||||||||||||||| || || || ||||||||||| ||||| ||||||||||
Sbjct 1020 GTTCGGGTTTTTCGGCCGCTTG-TTACCATCATTACTCGACTACTTCTTTTCTAGGAACA 1078
Query 1079 AATACATGCCATCAAGTCTGGTTTCTATGGCGGGTTCACTGGTAGCAATGGTAGCTTCGT 1138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AATACATGCCATCAAGTCCGGTTTCTATGGCGGGTTCACTGGTAGCAATGGTAGCTTCGT 1138
Query 1139 TTCTCCTCCTCCTCATCGACTCTGATATCGCTCTCTACATCAGCACGGCGATGATCGGCA 1198
||||||||||||| || ||||| || || |||||||||||| ||||||||||||| ||||
Sbjct 1139 TTCTCCTCCTCCTTATTGACTCCGACATTGCTCTCTACATCGGCACGGCGATGATTGGCA 1198
Query 1199 TCTTCTCCGGAGCCTTGACTTCACTCTCCGTCACAATGACGGCAGAGCTTTTTGGGACGA 1258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 TCTTCTCCGGAGCCTTGACTTCACTCTCTGTCACAATGACGGCAGAGCTTTTTGGGACGA 1258
Query 1259 AGCATTTTGGAGTTAACCACAACATTGTTGTCGGAAGTATTCCCCTTGGATCTTTTTCTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGCATTTTGGAGTTAACCACAACATTGTTGTCGGAAGTATTCCCCTTGGATCTTTTTCTT 1318
Query 1319 TCGGTTTGTTAGCCGCTAAAGTTTACCGCGACGGAGCCGCCCTCTATGGAGACGATGGCA 1378
|||||||||||||||||||| |||||||||||||||| || || || ||||| |||||||
Sbjct 1319 TCGGTTTGTTAGCCGCTAAAATTTACCGCGACGGAGCTGCTCTTTACGGAGATGATGGCA 1378
Query 1379 AGTGTTTTGGGATGCATTGCTTTCAAACCACTTTGGTATTTTGGGGAATGCTCTGTTCGA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 AGTGTTTTGGGATGCATTGCTTTCAAACCACTTTGGTATTTTGGGGAATGCTTTGTTCGA 1438
Query 1439 TCGCAGCTCTTCTCGCCGCCGTTTTATATATACGCAACCGCAAGTTCTATTCGCAGAAGC 1498
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 TCGCCGCACTTCTCGCCGCCGTTTTGTATATACGCAACCGCAAGTTCTATTCGCAGAAGC 1498
Query 1499 CGTAG 1503
|||||
Sbjct 1499 CGTAG 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5