BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320800
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30460.1 | Symbols: | Nucleotide/sugar transporter family p... 1718 0.0
AT1G06890.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1168 0.0
> AT2G30460.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr2:12976146-12978868 REVERSE LENGTH=1471
Length=1471
Score = 1718 bits (930), Expect = 0.0
Identities = 1021/1065 (96%), Gaps = 6/1065 (1%)
Strand=Plus/Plus
Query 1 ATGAGCGAGAG-CCACAAGTTCCAGCTTGGAACAATCGGCGCTTTGAGTTTATCCGTTGT 59
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 ATGAGCGA-TGCCCAGAAGTTCCAGCTTGGAACAATCGGCGCTTTGAGTTTATCCGTTGT 165
Query 60 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATCAGCACTCTTGGTTTCACATT 119
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 166 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATTAGCACCCTTGGTTTCACATT 225
Query 120 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTCACATTTTGTTCACTTCATGTGGCATT 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 226 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCATGTGGCATT 285
Query 180 ATGGATGAAGTTTTTTGAGCACCAGCCTTTTGATCCACGAGCTGTCTTGGGATTTGGTGT 239
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 286 ATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGCTGTCCTGGGATTTGGTGT 345
Query 240 ATTAAATGGTATATCCATTGGATTATTGAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 346 ATTAAATGGTATATCCATTGGATTATTAAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 405
Query 300 TTACCAGATGACAAAACTAGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTACCAGATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 465
Query 360 CAGAAAGAAGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGG 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAGAAAGATGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGG 525
Query 420 AATTGCAACCGTTACAGATCTTCAGCTTAATATGATGGGTTCTGTCTTGTCGCTGCTGGC 479
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 526 AATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTACTGGC 585
Query 480 TGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATACAAGGT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 586 TGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATATAAGGT 645
Query 540 TTCATCTACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTTGTTAC 599
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 646 TTCATCCACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACACTTTTTGTTAC 705
Query 600 AGGCCCATTTTTAGATGGTCTGTTAACCAACCAGAACGTGTTTGCTTTCAAGTACACGTC 659
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 706 TGGCCCATTTTTAGATGGTCTCTTAACCAACCAGAACGTGTTTGCTTTCAAATACACGTC 765
Query 660 TCAAGTTGTGTTCTTCATCGTTC-TGTCCTGCCTGATATCTGTTTCAGTAAACTTCAGCA 718
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 766 TCAAGTTGTGTTCTTCATCG-TCTTGTCCTGCCTCATATCTGTTTCAGTAAACTTCAGCA 824
Query 719 CGTTTCTCGTCATTGGAAAGACATCTCCAGTCACTTATCAGGTTCTAGGACATCTAAAAA 778
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 825 CGTTTCTCGTCATTGGAAAGACATCTCCTGTCACTTATCAGGTTCTAGGACATCTAAAAA 884
Query 779 CATGCCTAGTGTTAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAGCTGGCGCAACA 838
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CATGCTTAGTGTTAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAGCTGGCGCAACA 944
Query 839 TTCTTGGTATTCTTGTCGCCGTGATTGGAATGGTGCTTTATTCCTACTACTGCACACTCG 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 TTCTTGGTATTCTTGTCGCCGTGATTGGAATGGTGCTTTATTCCTATTACTGCACACTCG 1004
Query 899 AAACCCAACAAAAGGCTGCTGAAACATCAACCCAATTGCCCCAGATGGATGAAAACGAGA 958
|||||||||| ||||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1005 AAACCCAACAGAAGGCCACAGAAACATCAACTCAATTGCCTCAGATGGATGAAAACGAGA 1064
Query 959 AGGATCCGCTAATAAGTGTGGAAAACGGGAGCGGATTGATATCAGACAATGTAGTTCCAA 1018
| ||||||||| | |||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct 1065 AAGATCCGCTAGTTAGTGCGGAAAACGGGAGCGGATTGATATCAGACAATGGAGTGCAAA 1124
Query 1019 AG-ACGGATCCTGTATGGAACTCAAACAAAGATTTTCAAGCGTAG 1062
|| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 AGCA-GGATCCTGTATGGAATTCAAACAAAGATTTTCAAGCGTAG 1168
> AT1G06890.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:2111563-2114601 REVERSE LENGTH=1506
Length=1506
Score = 1168 bits (632), Expect = 0.0
Identities = 935/1079 (87%), Gaps = 30/1079 (3%)
Strand=Plus/Plus
Query 1 ATGAGCGAGAGCCACAAGTTCCAGCTT-GGAACAATCGGCGCTTTGAGTTTATCCGTTGT 59
||||||||| |||| ||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 268 ATGAGCGAGGGCCAGAAGTTCCAG-TTGGGAACAATCGGCGCTTTGAGTTTGTCCGTTGT 326
Query 60 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATCAGCACTCTTGGTTTCACATT 119
||| ||||| ||||| |||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 327 GTCATCTGTCTCGATTGTGATCTGTAACAAAGCGCTTATTAGCACCCTTGGCTTCACATT 386
Query 120 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTCACATTTTGTTCACTTCATGTGGCATT 179
|| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 387 CGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATT 446
Query 180 ATGGATGAAGTTTTTTGAGCACCAGCCTTTTGATCCACGAGCTGTCTTGGGATTTGGTGT 239
|||||||||| | || || ||| |||||||||||||||||||||| |||||||||| |
Sbjct 447 ATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGCTGTGATGGGATTTGGCAT 506
Query 240 ATTAAATGGTATATCCATTGGATTATTGAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 299
||| ||||| |||||||| ||| ||||||| |||||| |||| ||||||||||| |||||
Sbjct 507 ATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTT 566
Query 300 TTACCAGATGACAAAACTAGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 359
|||||||||||| |||||||| ||||||||||| |||||| |||| |||||| |||||||
Sbjct 567 TTACCAGATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACCCTCTTCTT 626
Query 360 CA-GAAAGAAGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTG 418
|| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 627 CAGGAAA-AAGTTCAGTCGAAAAATCCAGTTTTCATTAACCATCCTTCTCCTTGGTGTTG 685
Query 419 GAATTGCAACCGTTACAGATCTTCAGCTTAATATGATGGGTTCTGTCTTGTCGCTGCTGG 478
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 686 GAATTGCAACCGTCACAGATCTTCAACTTAATATGCTGGGTTCTGTCTTGTCGCTGCTGG 745
Query 479 CTGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATACAAGG 538
||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| | ||| |
Sbjct 746 CTGTTGTCACAACTTGTGTTGCTCAAATTATGACAAATACCATCCAGAAGAAGTTCAAAG 805
Query 539 TTTCATCTACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTTGTTA 598
||||||| || || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 806 TTTCATCCACGCAGCTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTCGTCA 865
Query 599 CAGGCCCATTTTTAGATGGTCTGTTAACCAACCAGAACGTGTTTGCTTTCAAGTACACGT 658
| || |||||||||||||| || ||||||| |||||||||||||||||||||||||| |
Sbjct 866 CTGGGCCATTTTTAGATGGGCTCCTAACCAATCAGAACGTGTTTGCTTTCAAGTACACTT 925
Query 659 CTCAAGTTGTGTTCTTCATCGTTCTGTCCTGCCTGATATCTGTTTCAGTAAACTTCAGCA 718
||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||||||||
Sbjct 926 CTCAAGTAGTGTTCTTCATCGTCCTGTCTTGCCTCATATCAGTCTCTGTAAACTTCAGCA 985
Query 719 CGTTTCTCGTCATTGGAAAGACATCTCCAGTCACTTATCAGGTTCTAGGACATCTAAAAA 778
| ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 986 CATTTCTTGTCATTGGAAAAACATCTCCTGTCACATATCAGGTTCTAGGACATCTCAAAA 1045
Query 779 CATGCCTAGTGT-TAGCATTTGGGTATCTTTTGCTGAAAGACGCATTC-AGCTGGCGCAA 836
||||||| || | |||||||||| ||| | |||||| |||| ||||| | |||||||||
Sbjct 1046 CATGCCTGGT-TCTAGCATTTGGCTATGTGTTGCTGCGAGACCCATTCGA-CTGGCGCAA 1103
Query 837 CATTCTTGGTATTCTTGTCGCCGTGATTGGAATGGT-GCTTTATTCCTACTACTGCAC-A 894
|||||| |||||||| || || |||||||||||||| | |||||||||| |||||| | |
Sbjct 1104 CATTCTCGGTATTCTAGTGGCTGTGATTGGAATGGTTG-TTTATTCCTATTACTGCTCGA 1162
Query 895 CTCGAAACCCAACAAAAGGCT-GCTGAAACATCAACCCAATTGCCCCAGATGGATGAAAA 953
| || || || || ||||| | |||||| ||||| || ||||| |||||| | || |
Sbjct 1163 TT-GAGACTCAGCAGAAGGCAAG-TGAAACCTCAACTCAGTTGCCTCAGATGAAAGAGAG 1220
Query 954 CGAGAAGGATCCGCTAATA--AGTGTGGAAAACGGGAGCGGATTGATATCAGA---CAAT 1008
||||||||||||||||||| || || |||| || |||||| || ||||||| |
Sbjct 1221 CGAGAAGGATCCGCTAATAGCAGC-TG-AAAATGGAAGCGGAGTGTTATCAGATGGCGGC 1278
Query 1009 GT---AGTTC--CAAA-GACGGA---TCCTGTATGGAACTCAAACAAAGATTTTCAAGC 1058
| ||| | |||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1279 GGGGGAGTGCAGCAAAAGACGGTGGCTCCTGTATGGAACTCAAATAAAGATTTTCAAGC 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5