BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320802
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30480.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3203 0.0
> AT2G30480.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 12
plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo
stage, petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 189 Blast hits
to 180 proteins in 63 species: Archae - 0; Bacteria - 43;
Metazoa - 86; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes
- 35 (source: NCBI BLink). | chr2:12987876-12993403
REVERSE LENGTH=3041
Length=3041
Score = 3203 bits (1734), Expect = 0.0
Identities = 1998/2124 (94%), Gaps = 24/2124 (1%)
Strand=Plus/Plus
Query 1 ATGCTGCAATGGATGGGAGGATCGAGGCGGAAAGTGGCCGCTTCACACACGTCAGTGAAG 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 474 ATGCTGCAATGGATGGGAGGATCGAGGCGGAAAGTAGCCGCTTCACACACGTCAGTGAAG 533
Query 61 AAGAGGCAAAAGCAATACTTTGAGCAGAGGAGACAGCAACAGCATCAGCTCACAGTTGGG 120
||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 534 AAGAGGCAAAAACAATATTTTGAGCAGAGGAGACAGCAACAGCATCAGTTCACAGTTGGG 593
Query 121 TCTGAGAGCTGTACTAATGATATAAACAATAGTAACCAACACTCAAGAGAACACCAATCT 180
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 594 TCTGAGAGCTGTAGTAATGATATAAACAATAGTAATCAACACTTAAGAGAACACCAATCT 653
Query 181 CTGGATATTCTCAATTTGCTGAACTTGTCAACCGCTACTCCTGAATGCAAACTTTCTTGT 240
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 654 CTGGATATTCTCAATTTGCTGAATTTGTCAACCGCTACTCCTGAATGCAAACCTTCTGGT 713
Query 241 CCAGAAAATGGAATGCAAGATCTGGATGCTGATTTCTACAGCCTGAAGGACAACATTTCC 300
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 714 CCAGAAAATGGAATGCAAGATCTGGATGCTGATTTTTACAGCCTTAAGGACAACATGTCC 773
Query 301 GGAGTAGGAAGTTCATTTAACCATATAGCAGAACCTACTTCCTCTAAGAGGACTTTGTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAGTAGGAAGTTCATTTAACCATATAGCAGAACCTACTTCCTCTAAGAGGACTTTGTTT 833
Query 361 AGTCTCCCTGACAACCAGACAAATGACTTCAAGAAAGCAAACACTGACAACCAGACAAAT 420
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 834 AGTATCCCTGACAACCAGACAAATGATTTCAAGAAAGCAAACACTGACAACCAGACAAAT 893
Query 421 GATTTCAAGAAAGCAAACACCACAGCAGATCTGATGGATGGCACAGAGCGGAAGTTATCT 480
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 894 GATTTCAAGAAAACAAACACCACCGCAGATCTGATGGATGGCACTGAGCGGAAGTTATCT 953
Query 481 GTCTTTGATTTGGTTGGTGATGATCATACAACAACCAACCTGGAAGAATGTTCTCCGTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTCTTTGATTTGGTTGGTGATGATCATACAACAACCAACCTGGAAGAATGTTCTCCGTCT 1013
Query 541 GAGGCCCACATGGCCTTTTCAGTTGAAGGATTAGGTAAAATAAACACGGAAACTCCAGTT 600
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAGGCTCACATGGCATTTTCAGTCGAAGGATTAGGTAAAATAAACACGGAAACTCCAGTT 1073
Query 601 AATTCTCCACAACCATCAGACAGAACCTTTGTGTACCGGTGCTCCTCTCCATGGATGGTA 660
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1074 AATTCCCCACAACCATCAGACAGAACTTTTGTGTACCGGTGCTCCTCTCCATGGAAGG-A 1132
Query 661 -AATGGTCAACCAAATACATCACATGTCAGGGAAAGGCTCAACGACTTTGAGAACGAAGT 719
| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1133 TACTGGTCAACCAGATACATCACATGTCAGGGGAAGGCTCAACGACTTTGAGAACGAAGT 1192
Query 720 GGACACAATAATTGAAAGTAGCAAAATCTTCCAAGATGACAGCCGTTATAGGTCTCCAAT 779
||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1193 GGACACAATGATTCAAAGTAGCAAAATGTTCCAAGATGACAGCCTTTATAGGTCTCCAAT 1252
Query 780 TGGCATACATGCTAAAGATGGGGGCAGAAAGCAAAAACTGCAGACTTTCAGTGATCACTT 839
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1253 TGGCATACATGCTAAAGATGGGGGCAGAAAGCAAAAACTGCAAACTTTCAGTGATCACTT 1312
Query 840 GCACAAACAATATAGCGACTCAAGAAGTAACTTCTGCGACGTTGCAGATTTCAACAACAG 899
||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||
Sbjct 1313 GCACAAACAATATAGCGACTCTAGAAATTACTTCTGTGACGTTGCAGATTTCAACAACAG 1372
Query 900 CAGGTTCTCTGATGACGAATGGAATGCTAAGTCCGCCTTTCTTGACGACGGGGAAGATAG 959
|||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1373 CAGGTTCTCTGACGATGAATGGAATGCTAAGCCCGCCTTTCTTGATGACGGGGAAGATAG 1432
Query 960 TTTTTACTGGAAGGGCGAACAGCCATGCCAAAAGGAAAGTTTGAACCCTGATTTCCTGAA 1019
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1433 TTTTTACTGGAAGGCCGAACAGCCATGCCAAAAGGAGAGTTTGAACCCTGATTTCCTGAA 1492
Query 1020 ATATGGTAAGGATTACACTGAGAGTCGCTCTTCTTCAGAACACCATAGGAAAAAGAAGAG 1079
|||| | || |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1493 ATATTGCAATGATTGCACTGAGAGTCGCTCTTCTACAGAACACCATAGGAAAAAGAAGAG 1552
Query 1080 GGATTACCTGGAAACGACCTGGAGGTCCAACATTAGAGATTCACCAACTCGAAGATCACA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GGATTACCTGGAAACGACCTGGAGGTCCAACATTAGAGATTCACCAACTCGAAGATCACA 1612
Query 1140 TCTTTTAGAAAGGAATATCGACCATCCAAGTTTCGCTAAGCCAGCAACCTCCGACTTTGA 1199
||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 1613 TCTTTTAAAAAGGAATATCGATTATCCAAGTTTCGCAAAGGCAGCAACCTCCGACTTTGA 1672
Query 1200 TTTTAACAATGTATTTGACCAACCGGTTTGGTCATCCATTGTACCTGAGGAAGATAAAGA 1259
|||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1673 TTTTGACAATGTATTTGACCGACCGGTTTGGTCATCCATTGTACTTGAGGAAGATAAAGA 1732
Query 1260 CAGCCATAGTTTGCGTAGCGAAGAATCTTGCTCGTCTAGTGCAGTTTGGACCAATGAAAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CAGCCATAGTTTGCGTAGCGAAGAATCTTGCTCGTCTAGTGCAGTTTGGACCAATGAAAC 1792
Query 1320 CCACAATTCACAGTTTGAGACCAACACAAGACAAAGAAAAAGGGAAACTAATTCGTTTCG 1379
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1793 CCACAATTCACAGTTTGAGACCAACACAAGACAAAGGAAAAGGGAAACTAATAAGTTTAG 1852
Query 1380 CAACCTTGGAGACAAGTATTATCTGAATAATAACCTTTTCCAAGAATCATGGGAAGACTG 1439
||||||||||||||| | ||| | |||| | |||||||||||||||| |||||||||||
Sbjct 1853 CAACCTTGGAGACAAAAAGTATATCAATACTGACCTTTTCCAAGAATCGTGGGAAGACTG 1912
Query 1440 GGATGTGGATGATCAACATATGAAGAGACAAGTTGGGTCTGGAAAGCAGGTCAGACTATC 1499
||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1913 GGAAGTGGATGATCAACATATGAAGAGACAAGTTAGGTCTGGAAAGCAGGGCAGACTATC 1972
Query 1500 AAACCCAGGAAAGTTAAAATCTACCAGTCAGAGAGAAGG-TGGTCTAGACGAGTCTTACA 1558
|||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1973 AAACTCAGGAAAGTTAAAATCTACCAGTCAGAGA-AAGGGTGGTCTAGACGCGTCTTACG 2031
Query 1559 ATTGGTTTGCTGAAGGATTTTCATCTGCAGGCATAAACTCAGATATTACAAGTGAGAGGG 1618
||||||||| ||||||||| |||| ||||| ||||||||||| |||||||||||||||
Sbjct 2032 ATTGGTTTGGAGAAGGATTTACATCAGCAGGAATAAACTCAGAGATTACAAGTGAGAGGA 2091
Query 1619 ACAAGCCATATCCTTTCCTTAACGCTGAGATTGGTAGCTCGCACTGGCGTTCATCTCGTG 1678
| ||||||||||||||||| ||| ||||| |||| ||| |||||||||||||||||||
Sbjct 2092 ATAAGCCATATCCTTTCCTAAACCCTGAGCGTGGTTCCTCTCACTGGCGTTCATCTCGTG 2151
Query 1679 CCCCTGATTCTATTCCGGAAACATGGGTTCCCAAGTTTTCAGTAGGAGGCACCGGAGATG 1738
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2152 CCCCTGATTCTATTCCGGAAACATGGATTCCCAAGTTTTCAGTAGGAGGCACCGGAGATG 2211
Query 1739 ATGATGATG---A--A-GACGA------CTATGTAAACTGTTTATCAGCAAACCATAAAT 1786
||||||||| | | || || ||||||||||||||||||||||||||||||||
Sbjct 2212 ATGATGATGGTGACCACGATGAAGAGGACTATGTAAACTGTTTATCAGCAAACCATAAAT 2271
Query 1787 CTAAACTAGCAGGAGGCACATGCGGTTTTGAGAATGACACGTTATCAGAGAACGATAATG 1846
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 CTAAACTAGCAGGAGACACATGCGGTTTTGAGAATGACACGTTATCAGAGAACGATAATG 2331
Query 1847 AGCAAAGCAGAGAAGTAAATCACCCAAAAA-TCCAGGGAGATGAGACCTCATCATCCGTT 1905
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 2332 AGCAAAGCAGAGAAGTAAATCACCCAAAAAATC-AGGGAGATGAGACCTCATCATCCATT 2390
Query 1906 GCTAAGAGCCTCTCAGACGAAAATGA-GTATGT-ACGATATAACCCCAACAAGGAGGTCA 1963
|| ||||||||||||||||||||||| || ||| | ||| ||||||||||||||||||||
Sbjct 2391 GCAAAGAGCCTCTCAGACGAAAATGATGT-TGTTA-GATGTAACCCCAACAAGGAGGTCA 2448
Query 1964 TGCAAGCTCGTCACCAA-GTAAACAGAGAATCAGGAGAAAAGACAAGTAGAGACTCGCTC 2022
|| |||||||||||||| | |||||||||||||||||||||||||||||||||| || ||
Sbjct 2449 TGGAAGCTCGTCACCAAAG-AAACAGAGAATCAGGAGAAAAGACAAGTAGAGACCCGTTC 2507
Query 2023 CAACAAATGATAATGCTGGAAAGACGCACACTTCAGCTCGTTTGTTTTAAGAAAACATTG 2082
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2508 CAACAAATGATAATGCTGGAAAGACGCACACTTCAGCTCGTTTGTTTTAACAAGGCATTG 2567
Query 2083 CTCCTTGACTCCTTAAAAACTTAG 2106
|| |||||||| ||||||||||||
Sbjct 2568 CTTCTTGACTCTTTAAAAACTTAG 2591
Score = 69.4 bits (37), Expect = 1e-10
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 404 CTGACAACCAGACAAATGATTTCAAGAAAGCAAACAC 440
|||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGACAACCAGACAAATGATTTCAAGAAAGCAAACAC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104417133600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5