BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320838

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   514    3e-145


> AT2G30930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED 
IN: 24 plant structures; EXPRESSED DURING: 14 growth 
stages; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G06540.1); Has 194 Blast hits to 176 proteins 
in 78 species: Archae - 0; Bacteria - 101; Metazoa - 15; 
Fungi - 25; Plants - 12; Viruses - 4; Other Eukaryotes - 37 
(source: NCBI BLink). | chr2:13162369-13163398 FORWARD LENGTH=826
Length=826

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 347/381 (91%), Gaps = 2/381 (1%)
 Strand=Plus/Plus

Query  86   AAACCGCCAGGACCGCTCTTACTGACGCTC-AGAAAACCGTTGAAGCCTCCACTGAAACG  144
            |||||||||||| | |||| |||||||| | ||| |||||||| ||| ||   |||||||
Sbjct  205  AAACCGCCAGGAGCACTCTAACTGACGC-CGAGACAACCGTTGCAGCATCTGTTGAAACG  263

Query  145  GTCAAGACCGAGGCTGAAGCCGCGCCAAAGAAAGCTTCTGATCTGTCTACACAGGCAAAG  204
            |||||||||||||||| |||||| ||| | ||||| |||| | ||||||||||||| |||
Sbjct  264  GTCAAGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGGCTAAG  323

Query  205  GATGCAATGGACAAAGGTATATCAAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACT  264
            |||||| ||||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct  324  GATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACT  383

Query  265  TTCGAAGCGAAGAGTAGCGATATTTCCTCAAAGCTCGTTGGAGGTGTTACCAATCTTGTG  324
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  384  TTCGAAGCGAAGAGCAGCGATATTTCCTCAAAGCTTGTTGGAGGTGTTACCAATCTTGTG  443

Query  325  AGTGGAGCATCGAGCAGCACCGTGGCAAGCCGAGACCTTCCCGTATCTACAGACAATCAG  384
            |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct  444  AGTGGAGCATCGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG  503

Query  385  CCTCTGCTAGCGTCTCGCGAGACGACACCGTGGTGGAAGAATTGTTGTGGAGTTCTTGAT  444
            ||||||||||||||| | || | ||| |||||||||||||||||||||||||||||||||
Sbjct  504  CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGAGTTCTTGAT  563

Query  445  CTTTTCAAGAAAGATACTTAA  465
            |||||||||||||||||||||
Sbjct  564  CTTTTCAAGAAAGATACTTAA  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5