BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg320841

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30942.1 | Symbols:  | Protein of unknown function (DUF3317)...   250    3e-66
  AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317)...   167    3e-41


> AT2G30942.1 | Symbols:  | Protein of unknown function (DUF3317) 
| chr2:13170871-13172021 FORWARD LENGTH=439
Length=439

 Score =  250 bits (135),  Expect = 3e-66
 Identities = 151/159 (95%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  1    ATGAACTGGGTTCAACGAAAAATCTATCTTTACAACGTCACCTTCGGGCTTTACATGCTT  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  83   ATGAACTGGGTTCAACGAAAAATCTACCTTTACAACGTCACCTTCGGGCTTTACATGCTC  142

Query  61   GATTGGTGGGAACGATACCTATTCAATTCTTTGGTGATAATCTTGATGTGGTTTATTCTG  120
            |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  143  GATTGGTGGGAACGATACCTATTCAATTCTTTAGTGTTAATCTTGATGTGGTTTATTCTG  202

Query  121  TACAATGGATCTCGCTATTTTTCAGAGCTCTGCAAGAGG  159
            |||||||||||||| || ||||| ||||| |||||||||
Sbjct  203  TACAATGGATCTCGTTACTTTTCCGAGCTTTGCAAGAGG  241


> AT1G06515.1 | Symbols:  | Protein of unknown function (DUF3317) 
| chr1:1990636-1992197 REVERSE LENGTH=633
Length=633

 Score =  167 bits (90),  Expect = 3e-41
 Identities = 137/160 (86%), Gaps = 2/160 (1%)
 Strand=Plus/Plus

Query  1    ATGAACTGGGTTCAACGAAAAATCTATCTTTACAACGTCACCTTCGGGCTTTACATGCTT  60
            ||||||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||||
Sbjct  148  ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  207

Query  61   GATTGGTGGGAACGATACCTATTCAATTCTTTGGTGATAATCTTGATGTGGTTTATTCTG  120
            |||||||||||||||||||| ||||||||||||||| |  | |||||||||||  || | 
Sbjct  208  GATTGGTGGGAACGATACCTCTTCAATTCTTTGGTGGTTGTTTTGATGTGGTTCGTTTTA  267

Query  121  TACAATGG-ATCTCGCTATTTTTCAGAGCTCTGCAAGAGG  159
            ||||| || | ||||||| ||||| ||||| | | |||||
Sbjct  268  TACAACGGTA-CTCGCTACTTTTCGGAGCTTTTCCAGAGG  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6991887789


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5