BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320852
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 448 5e-125
> AT3G10060.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr3:3102157-3104014 FORWARD LENGTH=1040
Length=1040
Score = 448 bits (242), Expect = 5e-125
Identities = 376/437 (86%), Gaps = 23/437 (5%)
Strand=Plus/Plus
Query 264 TCTACGAGCATCCAAGTTACCGGAAAGCGAATTAACGACTCTCCCTAGTGGTCTCAAGTA 323
|||||| ||||||||||||||||||||||| || ||||||||||| | ||||||||||||
Sbjct 401 TCTACGTGCATCCAAGTTACCGGAAAGCGATTTCACGACTCTCCCCAATGGTCTCAAGTA 460
Query 324 CTATGATATAAAAAGTTGGCAATGGAGTAGAGGCTGTGAATA-CATTTTC---T-G--GT 376
||||||||| ||| ||||||||||||| |||||||||||| | | | || | | ||
Sbjct 461 CTATGATAT-AAAGGTTGGCAATGGAGCAGAGGCTGTGAA-AGGA-TCTCGGGTCGCAGT 517
Query 377 TAAC--T-TTG-AAAAT-GAAAATGCTAACAGTT-TTCACAAGCCGACAAGGACTTGGCG 430
| || | ||| ||||| |||| | |||| ||| | ||||| |||||||||||||| |
Sbjct 518 TCACTATGTTGCAAAATGGAAAGGGATAAC-GTTCATGACAAGTCGACAAGGACTTGGTG 576
Query 431 TTGGAGGTGGAACGCCTTACGGGTTTGACGTTGGACAATCAGAGAGAGGCAATGTTCTGA 490
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 577 TTGGAGGTGGAACGCCTTATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGA 636
Query 491 AAGGACTAGTTCTTGAAACTGAAAGGCTTCTCAAACCGAAAGGCTGTCAGAGATTGGTGA 550
||||||| | ||||| || |||| | | | |||| |||||||||||||||
Sbjct 637 AAGGACTTGATCTTGGTGTTG-AAGGGAT-GC---GTG-TAGGCGGTCAGAGATTGGTGA 690
Query 551 TTGTTCCTCCCGAGTTGGCTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCTAAATGCAA 610
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 691 TTGTTCCTCCCGAGCTGGCTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTA 750
Query 611 CGATAGAGCTTGACATTGAGTTGTTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGA 670
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 751 CGATAGAGCTTGACATTGAGCTGTTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGA 810
Query 671 AGATCGTTGAAGGCTAA 687
|||| ||||||||||||
Sbjct 811 AGATAGTTGAAGGCTAA 827
Score = 219 bits (118), Expect = 4e-56
Identities = 136/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1 ATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACTCTCGGTCTTCCTCCATTCCC 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 135 ATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACTCTTTGTCTTCCTCCATTCCC 194
Query 61 TTTTCATCAAGAAAAAGGCAATCCAAACTGTACCTGTGCTCGTTACCTTCTCCCGGCTGC 120
||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 195 TTTCCCTCAAGAAAAAGGCAATCCAAACCGTACCGGTGCTCGTTACCTTCTCCCGGCTGC 254
Query 121 GAAAAGGTCATCGGACCAAAGACTG 145
|||||||||||| || || ||||||
Sbjct 255 GAAAAGGTCATCAGAACAGAGACTG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5