BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320861
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31100.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1347 0.0
AT1G06250.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 296 3e-79
> AT2G31100.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:13256738-13258176 REVERSE LENGTH=1247
Length=1247
Score = 1347 bits (729), Expect = 0.0
Identities = 836/886 (94%), Gaps = 13/886 (1%)
Strand=Plus/Plus
Query 188 CAGACGAAGGCAAGAAGTTGTTAGGGAGGAGGGACATTGTTGTTGCATGGCGAGGAACCA 247
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 367 CAGACGAAGGCAAGAAGTTGTTAGGGAGGAGGGGCATTGTTGTTGCATGGCGAGGGACCA 426
Query 248 TTCAGCTGTACGAGTGGGCTAACGACTTCGATTTCCCACTTGAATCAGCTGTTACT-GTT 306
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 427 TTCAGCTGTACGAGTGGGCTAACGATTTCGATTTCCCACTTGAATCAGCTGTTA-TGGTT 485
Query 307 TTCCCTCGAGCTAACCCGAATGACGAGCCTCGCATAGCCAATGGTTGGCTGTCTCTTTAT 366
|||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 486 TTCCCTGGAGCTAACCCGAATGACGAGCCTCGCGTAGCAAATGGTTGGCTATCCCTTTAT 545
Query 367 ACATCCACTGATCCGCGATCGCGTTTTGACAAGACCAGTGCACAAGAGCAGGTTCAAGGA 426
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 546 ACATCCACTGATCCACGATCACGTTTTGACAAGACCAGTGCACAAGAACAGGTTCAAGAA 605
Query 427 GAGCTTAAAAGGTTACTAGAATTGTACAAAAACGAAGACATTACCATCACCTTAACAGGC 486
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 606 GAGCTCAAAAGGTTACTAGAATTGTACAAAAACGAAGACGTTACCATCACCTTAACAGGC 665
Query 487 CATAGCTTGGGCGCAGTTATGTCGATTCTATCCGCCGCAGACTTTCTCCATAACGAATGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CATAGCTTGGGCGCAGTTATGTCGATTCTATCCGCCGCAGACTTTCTCCATAACGAATGG 725
Query 547 CCTAAGATCACACCAAGTCTACAACACAGGCTATCCTGTGTCACAGT-TTTCGCTTTTGG 605
||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||| ||
Sbjct 726 CCTAAGATCACACCAAGTCTACAACACAGCCTA---TGTGTCACAGTATTT-GCTTTCGG 781
Query 606 TAGTCCCCGCATCGGTGACCGCAGCTTCAAAAGACTCGTAGAGTCTCTCGAACACCTCCA 665
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAGTCCCCAAATCGGTGACCGAAGCTTCAAAAGACTCGTAGAGTCTCTCGAACACCTCCA 841
Query 666 CATCTTAAGAGTAACAAATGTCCCAGATCTCATTCCGCGTTACCCGGTATTCAGGTTCAC 725
|||| ||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct 842 CATCCTAAGAGTAACAAACGTCCCGGACCTCATTCCCCGTTACCCCGTATTCAGGTTCAC 901
Query 726 AGATGTAGGCGAGGAGCTTCAAATCAACACACTGAAATCAGAGTACCTGAAACGATCTCT 785
|||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 902 AGATATAGGCGAGGAGCTTCAAATCAACACATTAAAATCAGAGTACCTAAAACGATCTCT 961
Query 786 AAACCTGGGACATTTCCATAACCTGGAGGCTTACTTACACGGCGTGGCAGGGACACAACA 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAACCTGGGACATTTCCATAACCTGGAGGCTTACTTACACGGCGTGGCAGGGACACAACA 1021
Query 846 CAATCAAGGAGAATTCAAACTAGAGATAAACCGCGATATTGCGCTGGTGAACAAAGGTTT 905
||| ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct 1022 CAACCAAGGAGAATTCAAACTAGAGATTAACCGAGATATAGCACTGGTAAACAAAGGTTT 1081
Query 906 AGATGCTCTTGAAGATAAGTACTTAGTACCAGGACATTGGTGGGTTCTTGAGAACAAAGG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGATGCTCTTGAAGATAAGTACTTAGTACCAGGACATTGGTGGGTTCTTGAGAACAAAGG 1141
Query 966 AATGGTTCAAAGTGATGATGGGACATGGAAACTAAATGGTGACAGGTCAAAGAACAAACa 1025
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1142 AATGGTTCAAAGTGATGATGGGACATGGAAACTAAATGGTGACAGGTCAAAGAAGAAACA 1201
Query 1026 agaagaagaaga--a----gaagaaAACAATTGCAAATTCCCATGA 1065
|||||||||||| | |||||||||||||||||||||||||||
Sbjct 1202 AGAAGAAGAAGACGAAAAAGAAGAAAACAATTGCAAATTCCCATGA 1247
Score = 191 bits (103), Expect = 1e-47
Identities = 117/124 (94%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 1 ATGGTCGGAGACATCGCCAAGAGATGGAAAGAATTGAGCGGCAATAGCAAATGGAAAGAC 60
||||| ||||||||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 3 ATGGTAGGAGACATCGCCACGAGATGGAAAGAATTGAGCGGTAGTAGCAAGTGGAAAGAC 62
Query 61 CTGCTTGATCCTCTTGACTTGGATCTACGTCGTTATATCCTACACTATGGTGACATGGCT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 63 CTGCTTGATCCTCTTGACTTGGATCTACGCCGTTATATCCTACACTATGGTGATATGGCT 122
Query 121 GAGG 124
||||
Sbjct 123 GAGG 126
Score = 117 bits (63), Expect = 2e-25
Identities = 67/69 (97%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 122 AGGAGATAGCTGCTACACCAAAGAAGAGCTCTTTGCTCGAACTGGTTACCTCAAAGCAAA 181
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 170 AGGAGATAGCTGCTACACCAAAGAAGAGCTCTTTGCTCGAACCGGTTACCTCAAAGCCAA 229
Query 182 CCCTTTCAG 190
|||||||||
Sbjct 230 CCCTTTCAG 238
> AT1G06250.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:1913256-1914895 REVERSE LENGTH=1400
Length=1400
Score = 296 bits (160), Expect = 3e-79
Identities = 608/818 (74%), Gaps = 56/818 (7%)
Strand=Plus/Plus
Query 206 TGTTAGGGAGGAGGGACATTGTTGTTGCATGGCGAGGAAC-CATTCAGCTGTACGAGTGG 264
||||||||||||| |||||||||||||||||| ||||||| | | |||| || || |||
Sbjct 428 TGTTAGGGAGGAGAGACATTGTTGTTGCATGGAGAGGAACTC-TACAGCCATATGAATGG 486
Query 265 GCTAACGACTTCGATTTCCCACTTGAATCAGCTGT-TACTGTTTTCCCTCG-AGCTAACC 322
||||| || |||||||| || ||||| ||||| | | | |||||||| | | || |||
Sbjct 487 GCTAATGATTTCGATTTTCCGCTTGAGCCAGCTATCT-CGGTTTTCCC-AGTAACTGACC 544
Query 323 CGAATGACGAGCCTCGCATAGCCAA-TGGTTGGCT-GTCTCTTTATACATCCACTGATCC 380
| || || | ||||| || | || ||| ||||| | | | ||||| | ||||| |
Sbjct 545 CCAAAGATAACCCTCGTATTG-GAAGTGGCTGGCTCGAC-ATCTATACCGCTTCTGATTC 602
Query 381 GCGATCGCGTTTTGACAAGACCAGTGCACAAGAGCAGGTTCAAGGAGAGCTTAAAAGGTT 440
|| || | || ||||| ||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct 603 TCGCTCACCTTATGACACGACTAGTGCACAAGAACAGGTACAAGGAGAGCTCAAGAGGTT 662
Query 441 ACTAGAA-TTGTACAAAAACGAAGACATTACCATCACCTTAACAGGCCATAGCTTGGGCG 499
|||||| || ||||| | ||||| || | ||||||||| |||||||||||||||||||
Sbjct 663 GCTAGAACTT-TACAAGGATGAAGAAATAAGCATCACCTTCACAGGCCATAGCTTGGGCG 721
Query 500 CAGTTATGTC-GATTCTATCCGCCGCAGA-CTT-TCTCCATAACGAATGGCCTAAGATCA 556
|||||||||| | ||||||| || ||||| ||| ||| || | || | ||| ||||
Sbjct 722 CAGTTATGTCAG-TTCTATCAGCTGCAGATCTTGTCT--ATGGCAAAAAGAATAATATCA 778
Query 557 C-ACCAAGTCTACAACACAGGCTA-T-CCTGTGTCACAGTTTTCGCTTTTGGTAGTCCCC 613
| || ||| ||| | | || | | ||| | ||||||||| ||||| || ||||| |
Sbjct 779 ATATAAA-TCTTCAAAAAAAGCAAGTTCCTAT--CACAGTTTTTGCTTTCGGGAGTCCTC 835
Query 614 GCATCGGTGACCGCAGCTTCAAAAGAC-TCGTAGAGTCTCTCGAAC-ACCTCCACAT-CT 670
| || || |||| | |||||||| || | || || || ||| ||| || | |||| ||
Sbjct 836 GGATTGGAGACCATAACTTCAAAA-ACGTAGTCGACTCACTCCAACCAC-TAAACATTCT 893
Query 671 TAAGAGTAACAAATGTCCCAGATCTCATTCCGCGTTACCCGGTATT-CAGGTTCACAGAT 729
|||| || |||||| |||||| || || | ||| || | || | | | | ||||
Sbjct 894 -AAGAATAGTAAATGTTCCAGATGTCGCACCACATTATCCACTCTTACTG-TACTCAGAA 951
Query 730 GTAGGCGAGGAGCTTCA-A-ATCAACACACTGAAATCAG-AGTACCTGAAACGATCTCTA 786
| ||||||| | || | | ||||| || |||| ||| | ||||||||||| |||||
Sbjct 952 ATTGGCGAGGTG-TT-AGAGATCAATACTTTGAACTCAACA-TACCTGAAACGGTCTCTG 1008
Query 787 AACCTG-GGACATTTCCATAACCTGGAGGCT-TACTTACACGGCGTGGCAGGGACACAAC 844
||| | ||| | | ||||||||||||| | ||| | |||||| ||||||||| |||
Sbjct 1009 AACTTCAGGA-ACTACCATAACCTGGAGA-TATACCTGCACGGCATGGCAGGGATGCAAG 1066
Query 845 ACAATCA-A-GGAGAATTCAAACTAGAGATAAACCGCGATATTGCGCTGGTGAACAAAGG 902
| | || | || | |||||| || ||||| ||| |||||| || |||| || |||||
Sbjct 1067 ATA--CAGACGGGGTATTCAAGCTGGAGATTGGCCGGGATATTTCGTTGGTCAATAAAGG 1124
Query 903 TTTAGATGCTCTTGAAG-ATAAGTACTTAGTACCAGG-ACATTGGTGG-GTTCTTG-AGA 958
|| |||||||| ||| | |||||||||| ||| | || | || || || || | | |
Sbjct 1125 ATTGGATGCTCTA-AAGGACGAGTACTTAGTGCCAAGTACCT-GGAGGTGT-CTGGCA-A 1180
Query 959 ACAAAGGAATGGTTCAAAGTG-ATGATGGGACATGGAA 995
||||||| ||| |||||| || ||||||||||||||||
Sbjct 1181 ACAAAGGGATGCTTCAAA-TGGATGATGGGACATGGAA 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5