BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320865
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31150.1 | Symbols: | ATP binding;ATPases, coupled to trans... 1223 0.0
> AT2G31150.1 | Symbols: | ATP binding;ATPases, coupled to transmembrane
movement of ions, phosphorylative mechanism | chr2:13272375-13274578
FORWARD LENGTH=2049
Length=2049
Score = 1223 bits (662), Expect = 0.0
Identities = 885/985 (90%), Gaps = 45/985 (5%)
Strand=Plus/Plus
Query 215 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079
Query 275 ACAGACGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTTT 334
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| || |
Sbjct 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139
Query 335 CCCCGAAATTCCAGGCTACTTCATCACCTGGACCGAAAGAGAAAGAGATAGTGGAGCTTT 394
| ||||| | | | || || || || ||||||||||||||||
Sbjct 1140 C-------TTCCA----A----A--A-----AC-GA--GA-AA-GAGATAGTGGAGCTTT 1172
Query 395 TCAGGAAAGTTCAAGCTCAGCTCCGGGCTCGAGCTGCTGCTaagaaagaagaaaagaaga 454
||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCTGCTAAGAAAGAAGAAAAGAAGA 1232
Query 455 ctgaagaagcttctaaaggacaaggaggaaaagaTAGCGAGACAGTGGACTCCCTTCTTA 514
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1233 CTGAAGAAGCTTCTAAAGGACAGGGAGGAAAAGAGAGTGAGACAGTGGACTCCCTTCTTA 1292
Query 515 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAAAAACAAGTTAGCAATTTTAATTCTG 574
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1293 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAAACAAGTTAGCAATTTCAATTCTG 1352
Query 575 AAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAGACAAGATCACAGTTCCAATCGTT 634
| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1353 AGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAGACAAAATCACAGTTCCAGTCGTT 1412
Query 635 TTGATTCGCAAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 694
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TCGATTCGCGAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 1472
Query 695 GACGCAATTCGCCTGTACCAAGACATAAATCCCAAGCCAGCTATTCTAGTGAGGCCATTT 754
||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1473 AACGTAATTCTCCTGTACCGAGACATAAATCTCAAGCCAGTTATTCTAGTGAGGCCATTT 1532
Query 755 TTGATCAAGGTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 814
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 1592
Query 815 GTGATGAACCTGAATACGAACCTGAGCATGAGTCTGAGTCTGCAGCTGGGTATGATGAAC 874
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1593 GTGATGAACCTGAATACGAGCCTGAGC------CTGAGTCTGCAGCTGAGTATGATGAAC 1646
Query 875 CTGAACCCGAGGGTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAG 934
||||||| |||| |||||||||| ||||||||||||||| |||||||||||| || ||||
Sbjct 1647 CTGAACCTGAGGCTGAGTATGAACCTGAATCTGAACCAGAACTTGCTATTCTCGAATCAG 1706
Query 935 TGTCAGAGCTAAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATC 994
|||||||||| |||| ||| ||||||||||||||||| ||||||||||| | | ||||||
Sbjct 1707 TGTCAGAGCTGAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATC 1763
Query 995 ATGACGCCGTTGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAG 1047
|| || |||| |||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 1764 ATAACTTCGTTATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAG 1823
Query 1048 GAAGAAACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATA 1107
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1824 GAAGAGACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATA 1883
Query 1108 GCAAAAACAAGAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTT 1166
|||||| |||||||||| |||| || |||||||||| ||||||| ||| ||| ||| |||
Sbjct 1884 GCAAAATCAAGAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTT 1942
Query 1167 ATTGGGTAGTAATAATAAATCATGA 1191
||||||||||| ||||||| |||||
Sbjct 1943 ATTGGGTAGTAGTAATAAAGCATGA 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5