BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320901
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31530.1 | Symbols: EMB2289, SCY2 | SecY protein transport f... 2457 0.0
> AT2G31530.1 | Symbols: EMB2289, SCY2 | SecY protein transport
family protein | chr2:13427011-13430465 FORWARD LENGTH=1934
Length=1934
Score = 2457 bits (1330), Expect = 0.0
Identities = 1534/1631 (94%), Gaps = 20/1631 (1%)
Strand=Plus/Plus
Query 87 TCAATCCAGGAAATGTCTTACTATGAATTTGAATTTGTCAAG---GAGAGAAGGACATTT 143
|||| |||| ||||| ||||||| |||||||||| ||||||| |||| |||| ||||
Sbjct 154 TCAACCCAGAAAATGCCTTACTACGAATTTGAATATGTCAAGAACGAGACAAGGGCATTC 213
Query 144 TATTCAGATGAACAGAAGACATC-TCTTTATAAAAGAAAGGAAGAGTTTTTCGATAAATT 202
||| || |||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 214 TATACAAATGAACAGAAGACATCTTC-TTATGAAAGAAAGGAAGAGTTTTTCGATAAATT 272
Query 203 ATTCCGATAAGCTCAGAGATGATTCTATGAGCAGTGAGGAGATGCATGTAGATGCTTTGG 262
||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 273 ATTCCGATAAGTTCAGAGATGATTCTATGAGTAGCGAGGAGATGCATACAGATGCTTTGG 332
Query 263 ATGTGGAGATTGCTCCACCAGATTCACAGGACAGTCATATTTCACGGAATTCTACTGTCT 322
||||||||||| ||| |||||||||||||||| || || ||||| ||| ||| ||||||
Sbjct 333 ATGTGGAGATTATTCCGCCAGATTCACAGGACATTCGTAATTCACAGAACTCTGCTGTCT 392
Query 323 CCAGCACTCTACAGGAAGATAGGCCAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTC 382
||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CCAACACACTACAGGATGATAGGCCAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTC 452
Query 383 GCATAAGTTCAGTACTCAATACTGCAGCTGAAAGATTCTTTAAGAGCGAGATAAGGAGGA 442
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 453 GGATAAGTTCAGTACTCAATACTGCAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGA 512
Query 443 GGTTGTTTGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTAC 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GGTTGTTTGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTAC 572
Query 503 CTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTCTCGGGTTCTG-TG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 573 CTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTCTCGGGTTCTGTTG 632
Query 562 -GGTGAGTGTTCTCATTTTGGAGCAGAGATCAAGCTTTCCCTCTTCCAGCTTGGGCTCAG 620
|| | || | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 AGG-AACTG-GGTGAGTTTGGAGCAGAGATCAAGCTTTCGCTCTTCCAGCTTGGGCTCAG 690
Query 621 TCCACAAATAATAGCATCCATAATTATGCAGGTGCTTTGTCACGTTCTTCCATCCTTGGT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCCACAAATAATAGCATCCATAATTATGCAGGTGCTTTGTCACGTTCTTCCATCCTTGGT 750
Query 681 GAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTATGGT 740
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 751 GAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATA----TATGGT 806
Query 741 GGCTATCGTTTCTCTTTGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCACTTCAAT 800
||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 807 GGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAAT 866
Query 801 ATTCAGTTTTTGCAGCCACTG-CC----C-A-CATGTAATGATGACAGCATCTTTGCTAG 853
||||||||||||||||||||| || | | ||||| ||||||||| ||||| ||||||
Sbjct 867 ATTCAGTTTTTGCAGCCACTGCCCAGGTCAAGCATGTGATGATGACATCATCTCTGCTAG 926
Query 854 TCTGTGGTGCAATGACAATGACGTGGCTGTGTGATACAATATCAGAATCCGGATTTGGTC 913
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 927 TCTGTGGTGCAATGACAATGACGTGGCTCTGTGATACAATATCAGAATCTGGATTTGGTC 986
Query 914 ATGGGTCATCTCTAATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACCTTACACA 973
|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 987 ATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACA 1046
Query 974 AGATGCTGAATCAAATCTCAGGAAGTTTCTCGAATTGGTTGCCTTACTTGTTAGGCTTGC 1033
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1047 AGATGCTCAATCAAATCTCAGGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGC 1106
Query 1034 TGGGCATTTTTACGGTAGTAACTATGTTCGCGGTTGTTGTTACTGAGGGCTGCAGGAAGA 1093
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1107 TGGGCATTTTTACCGTAGTAACTATGTTCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGA 1166
Query 1094 TAAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGAGAAGGTTCTCCAATAA 1153
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGAGAAGGTTCTCCAATAA 1226
Query 1154 CCGAGGTGGAGCCTTACATACCTTTTAACATTAACCCAGCAGGAATGCAACCTGTTCTCA 1213
| ||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1227 CAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTGTTCTCA 1286
Query 1214 CAACCACATATCTCTTGGCATTCCCCAGCATTCTTGCTAGTATTCTGGGTTCACCTTTCT 1273
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1287 CAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGTATTCTGGGTTCACCTTTCT 1346
Query 1274 TGGTACACGTGAAGGAGATATTAAACCCGGAAAGCACGGTTGGAGCACCGCCTTGGGTCT 1333
|| || || ||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1347 TGCTAAACATGAAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCT 1406
Query 1334 ATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATCTTTGACATTGCCAACTTGC 1393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1407 ATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATATTTGACATTGCCAACTTGC 1466
Query 1394 CAAAGGAAATAGCCGATTATTTAAACAAAATGGGAGCGAGAATACCCAATATAAAGCCTG 1453
||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1467 CAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCGAGAATACCGAACATAAAGCCTG 1526
Query 1454 GGAAAGCCACGATCGAGTACTTAACGAAGATACAAGCATCAACTAGGTTTTGGGGTGGCC 1513
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GGAAAGCCACAATCGAGTACTTAACGAAGATACAAGCATCAACTAGGTTTTGGGGTGGCC 1586
Query 1514 TTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCA 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCA 1646
Query 1574 ATCAAGGCTTTTCTATCGGATTTACATCGGTTTTGATCATCGTTGGTTCCATTATTGAAC 1633
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1647 ATCAAGGCTTTTCTATCGGATTTACATCTGTTTTGATCATTGTTGGTTCCATTATTGAAC 1706
Query 1634 TCAGAAGATCTTACCATGCCTACAATGTAATGCCTAGTTTAAGCAAAGCGTTGAAGAGAT 1693
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1707 TCAGAAGATCTTACCATGCCTACAATGTAATGCCGAGTTTAAGCAAAGCGTTAAAGAGAT 1766
Query 1694 ATGGTGTATAA 1704
|||| ||||||
Sbjct 1767 ATGGCGTATAA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5