BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320951
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32060.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 571 1e-162
AT1G15930.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 390 4e-108
> AT2G32060.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr2:13639016-13640316 REVERSE LENGTH=761
Length=761
Score = 571 bits (309), Expect = 1e-162
Identities = 345/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGGATGTGAGTACTGCATTGGAGTTGACAGTAAGGAAATCTCGTGCTTATGGTGGTGTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 187 ATGGATGTGAGTACTGCATTGGAGTTGACTGTAAGGAAATCTCGTGCTTATGGTGGTGTT 246
Query 61 GTTCGTGGTCTCCATGAAAGCGCTAAGCTTATCGAGAAGCGTGTTGCTCAGCTCTGTGTC 120
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 247 GTTCGTGGTCTCCATGAAAGCGCTAAGCTTATTGAGAAGCGTAATGCTCAGCTCTGTGTC 306
Query 121 TTGGCTGAAGATTGCAACCAACCTGATTATGTCAAGCTGGTTAAAGCTCTTTGTGCTGAC 180
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 307 CTGGCTGAAGATTGCAACCAACCTGATTATGTCAAGCTTGTTAAAGCTCTTTGCGCTGAC 366
Query 181 CACAGCATCAAGTTGCTTACGGTTCCAAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTT 240
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 367 CACAGCATCAAATTGCTTACTGTTCCAAGTGCCAAAACACTCGGCGAATGGGCTGGTCTT 426
Query 241 TGCAAGATTGATTCAGAGGGAAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAATC 300
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 427 TGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATC 486
Query 301 AAGGATTACGGTGAGGAGACAACTGCTCTAAACATTGTCAAGAAGCATCTTGAGTCTAAC 360
||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 487 AAGGATTTCGGTGAGGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGATTCTAAC 546
Query 361 TAA 363
|||
Sbjct 547 TAA 549
> AT1G15930.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr1:5471400-5473014 FORWARD LENGTH=825
Length=825
Score = 390 bits (211), Expect = 4e-108
Identities = 300/343 (87%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 13 ACTGCATTGGAGTTGACAGTAAGGAAATCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTC 72
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 202 ACTGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTC 261
Query 73 CATGAAAGCGCTAAGCTTATCGAGAAGCGTGTTGCTCAGCTCTGT-GTCTTGGCTGAAGA 131
||||| | ||||||||||| ||||||||||| ||||| ||| || ||||||||||||||
Sbjct 262 CATGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTC-GTTGTCTTGGCTGAAGA 320
Query 132 TTGCAACCAACCTGATTATGTCAAGCTGGTTAAAGCTCTTTGTGCTGACCACAGCA-TCA 190
|||||||| ||||||||||||||||| || || ||||| |||||||| ||| | | |||
Sbjct 321 CTGCAACCAGCCTGATTATGTCAAGCTTGTGAAGGCTCTCTGTGCTGATCAC-GAAGTCA 379
Query 191 AGTTGCTTACGGTTCCAAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGATTG 250
|||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 380 GGTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTCTCTGCAAGATTG 439
Query 251 ATTCAGAGGGAAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAATCAAGGA-TTAC 309
|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| || |
Sbjct 440 ATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGGACTT-C 498
Query 310 GGTGAGGAGACAACTGCTCTAAACATTGTCAAGAAGCATCTTG 352
|| |||||||||||||| || | || ||||| |||||| |||
Sbjct 499 GGCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTG 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5