BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320968
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32270.1 | Symbols: ZIP3 | zinc transporter 3 precursor | ch... 1568 0.0
> AT2G32270.1 | Symbols: ZIP3 | zinc transporter 3 precursor |
chr2:13704221-13706860 FORWARD LENGTH=1325
Length=1325
Score = 1568 bits (849), Expect = 0.0
Identities = 952/1003 (95%), Gaps = 2/1003 (0%)
Strand=Plus/Plus
Query 43 AAACTCTTACTCTTCTTCTTCTCCATCTCCCTCCTTCTCATTGCGGTCGTCAACGCGGCA 102
||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 76 AAACTCTTATTCTTCTTCTTCTCCGTCTCCCTCCTTCTCATCGCCGTCGTCAACGCCGCC 135
Query 103 GAAGGCCATTCACATGGTGGACCGAAATGTGAATGCTCACACAAAGATGACCATGAAAAC 162
||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 136 GAAGGCCATTCACATGGTGGACCAAAATGTGAATGCTCACACGAAGACGACCATGAAAAC 195
Query 163 AAAGCGGGAGCTCGGAAATACAAGATCGCCGCCATTCCTACCGTTCTAGTCGCCGGTATA 222
||||| |||||||||||||||||||||||||| |||||||| |||||| | ||||| |||
Sbjct 196 AAAGCCGGAGCTCGGAAATACAAGATCGCCGCAATTCCTACAGTTCTAATAGCCGGCATA 255
Query 223 ATCGGAGTTCTTTTCCCTTTGTTAGGCAAAGTCTTCCCTTCTTTGGGTCCAGAAACATCT 282
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 256 ATCGGAGTTCTTTTCCCTTTGTTAGGCAAAGTCTTCCCTTCTTTGCGTCCAGAAACATGT 315
Query 283 TTCTTCTTTGTCACGAAAGCTTTCGCGGCCGGAGTTATCCTT-GCTACCGGATTTATGCA 341
|||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 316 TTCTTCTTCGTCACGAAAGCTTTCGCAGCCGGAGTTAT-CTTGGCTACCGGATTTATGCA 374
Query 342 TGTCTTGCCTGAGGCTTACGAGATGCTTACCTCGCCGTGTCTGACATCTGAAGCATGGGA 401
||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 375 TGTCTTGCCTGAGGCTTACGAGATGCTTAACTCTCCATGTTTGACATCTGAAGCATGGGA 434
Query 402 ATTTCCGTTCACCGGATTTATTGCAATGATTGCTGCGATCCTGACGCTATCCGTTGATAC 461
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 435 ATTTCCGTTCACCGGATTTATTGCGATGATTGCTGCGATCTTGACGTTATCCGTTGATAC 494
Query 462 ATTTGCCACTTCGAGTTTCTATAAATCACATTGCAACGCGTCGAAGAGGGTCAGTGATGG 521
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 495 ATTTGCCACTTCGAGTTTCTATAAATCGCATTGCAAAGCGTCTAAGAGGGTCAGTGATGG 554
Query 522 AGAATCCGGCGAGACCTCCGTGGACTCCGAGAAGGTCCAAATTCTCCGGACTAGAATTAT 581
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 555 AGAAACCGGCGAGTCCTCCGTTGACTCCGAGAAGGTCCAAATTCTCCGGACTAGAGTTAT 614
Query 582 TGCACAGGTATTGGAGTTGGGCATAATAGTACACTCAGTGGTAATAGGAATATCACTTGG 641
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 615 TGCACAGGTATTGGAGTTGGGAATAATAGTACACTCAGTGGTAATAGGAATATCACTAGG 674
Query 642 AGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTCTTTATTGCCTTAATGTTTCATCAATG 701
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 675 AGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTGTTTATTGCCTTAATGTTTCATCAATG 734
Query 702 CTTTGAAGGGCTTGGCCTTGGTGGTTGTATTGCTCAGGGAAAATTCAAGTGTTTGTCGGT 761
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 CTTCGAAGGTCTAGGCCTTGGTGGTTGTATTGCTCAGGGAAAATTCAAGTGTTTGTCAGT 794
Query 762 AACAATAATGTCGACGTTCTTCGCAATAACGACACCAATAGGAATCGTTGTGGGAATGGG 821
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 795 AACAATCATGTCGACGTTCTTCGCAATAACGACACCGATAGGAATCGTTGTGGGAATGGG 854
Query 822 AATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTCTGATCGTGCAAGGAGTTTTGAA 881
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 855 AATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTCTGATCGTTCAAGGAGTTTTGAA 914
Query 882 CGCTGCATCCGCAGGCATTCTCATCTACATGTCTCTGGTGGACCTTCTCGCAGCAGATTT 941
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 915 CGCTGCATCCGCAGGCATTCTCATCTACATGTCTTTGGTTGACCTTCTCGCAGCAGATTT 974
Query 942 CATGCACCCTAAAATGCAATCCAATACTGGGCTTCAAATCATGGCCCATATTGCTCTCCT 1001
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 975 CACGCACCCTAAAATGCAATCCAATACTGGGCTTCAAATTATGGCCCATATTGCTCTCCT 1034
Query 1002 TCTTGGTGCTGCCCTCATGTCTCTGTTGGCTAAATGGGCTTGA 1044
||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1035 TCTTGGTGCTGGCCTCATGTCTCTATTGGCTAAATGGGCTTGA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5