BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320982
Length=2676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 4239 0.0
> AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761137-13765456
REVERSE LENGTH=2881
Length=2881
Score = 4239 bits (2295), Expect = 0.0
Identities = 2559/2686 (95%), Gaps = 20/2686 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAGAGAAAAGGCCAAAATCGTAATTACCGTAGCTTCTCTGGTGGCGGTGACA 60
|||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 36 ATGGAGCTCAAAGAAAAGGCTAAAGTCGTAATTACCGTAGCTTCTCTGGTGGCGGTGACA 95
Query 61 GTTCTGTTCGTGGCGGAGTATCG-C--CGCCGCCACATGAGGAAGCAGACATCTTCTTCT 117
||||||||||| |||||||||| | |||||||| | |||||||||||||||||| | |
Sbjct 96 ATTCTGTTCGTGACGGAGTATCGCCGGCGCCGCCAGAGGAGGAAGCAGACATCTTC-T-T 153
Query 118 CTAAGCTCGTGTTATCTGCATTCCGAGCTGAAGTCGCAGTTTGGTTTCAAACGTGTTCTT 177
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||
Sbjct 154 -TAAGCTCGTGTTATCTGCATTCTGAGCTGAAGCCTCAGTTTGGTTTTAAACGTGTTCTT 212
Query 178 GCGGATAACTCTTATTCTGAATTCAAACACTTGAAGCTCGATGATGCTTCTTC--C-TCC 234
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 213 GCGGATAACTCTTATTCTGAATTCAAACACTTGAAGCTCGTTGATGCTTCTTCTTCTTCC 272
Query 235 TTAGAGAATTCTTCGAATGGTCATCCATATGAAACTGAGATCACTGTTTTGTTAGAGAAT 294
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTAGAGAAACCTTCGAATGGTCATCCATATGAAACTGAGATCACTGTTTTGTTAGAGAAT 332
Query 295 CCTCGGATTGAATTTGGATTTTTGAGAGGAGAGTATTCATTGGAATTGAGTGATTCATAT 354
|||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 333 CCTCAGATTGAGTTTGGATTTTTGAGAGGAGAGTGTTCATTGGAAATGAGTGATTCATAT 392
Query 355 GTGTGGGTTGAGACGGAGTTGCAGTTAAAAGAACTTGCAGAAATATTGGCAAAAGAAAAA 414
|||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 393 GTGTGGGTTGAGACAGAGTCGCAGTTAAAGGAACTTGCAGAAATATTAGCAAAAGAACAA 452
Query 415 GTTTTTGCGGTGGATACTGAGCAGCATAGTTTCCGGTCGTTTCTTGGTTTCACTGCTCTA 474
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 453 GTTTTTGCGGTTGACACTGAGCAGCATAGTTTGCGGTCGTTTCTTGGTTTCACTGCTCTA 512
Query 475 ATTCAGATTTCTACACACGAGGAAGATTTTTTGGTGGACACAATTGCATTACATGATGCA 534
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
Sbjct 513 ATTCAGATTTCTACACATGAGGAAGACTTTTTGGTGGACACAATTGCGTTACATGATGTA 572
Query 535 ATGAGTATTCTTCGTCCTGTTTTTTCTGAACCCAATATCTGCAAGGTGTTTCACGGGGCT 594
||||||||||||||||||||||| ||||| || ||||| || ||||||||||||||||||
Sbjct 573 ATGAGTATTCTTCGTCCTGTTTTCTCTGATCCTAATATTTGTAAGGTGTTTCACGGGGCT 632
Query 595 GATAACGATGTTCTCTGGCTTCAGAGAGACTTCCATATATATGTTGTTAATATGTTTGAT 654
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 633 GACAACGATGTTATCTGGCTTCAAAGAGACTTCCATATATATGTTGTTAATATGTTTGAT 692
Query 655 ACTGCCAAGGCATGTGAGGTGTTGTCAAAGCCTCAACGGTCACTGGCATACTTACTTGAG 714
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 693 ACTGCCAAGGCATGTGAAGTGTTGTCAAAGCCTCAACGATCACTGGCATACTTACTTGAG 752
Query 715 ACAGTATGTGGAGTGGCTACTAACAAATTGTTGCAGCGTGAAGATTGGAGGCAACGTCCT 774
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 753 ACAGTATGTGGAGTGGCTACTAACAAATTGCTGCAGCGTGAAGATTGGAGACAGCGTCCT 812
Query 775 CTGTCTGAAGAGATGGTGCGATATGCTAGAACAGATGCACACTATCTGCTCTATATTGCA 834
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 813 CTGTCCGAAGAGATGGTGCGATATGCTAGAACAGATGCACACTATCTGCTTTATATTGCA 872
Query 835 GATAGTTTGACTGA-TGAACTCAAACAACTAGCCACTGAAGATTCATCTAGCCCAGATGA 893
||||||||||| | ||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 873 GATAGTTTGAC-AACTGAACTCAAACAATTAGCCACT---GATTCATCTAGCCCCGATGA 928
Query 894 CAGATTCCATTTTCTTCTCGAGGCTAGTAGGCGGTCAAACATGACCTGTTTGCAATTGTA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 CAGATTCCATTTTCTTCTCGAGGCTAGTAGGCGGTCAAACATGACCTGTTTGCAATTGTA 988
Query 954 CACAAAAGAAACCGAAGATTTTCCTGGTAGTGCTGCTG-CTTCCTCAATAATTTATCGGC 1012
||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 989 CACGAAAGAAACTGAAGATTTTCCTGGTAGTGCTGC-GTCTTCCTCAATAATTTATCGGC 1047
Query 1013 ATTTAAACGGACACGGAGATAATTCTAACATATCCTTGAACGCAGAAGAGCTCGTTAGGA 1072
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1048 ATTTAAACGGACACGGAGATAAGTCTAACATCTCCTTGAACGCAGAAGAGCTTGTTAGGA 1107
Query 1073 AACTTTGTGCATGGAGAGATTTAATGGGACGGATTCATGATGAGAGTACTCGATATGTGT 1132
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1108 AGCTTTGTGCATGGAGAGATTTAATGGGACGGATTCATGATGAAAGCACGCGATATGTGT 1167
Query 1133 TATCTGACCAAGCTATAGTTGCTCTTGCTTGTAAGCAGCCAACTACAAACGAAGAGATAT 1192
||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 1168 TATCTGACCAAGCTATAGTTGGTCTTTCTTGTAAGCAGCCAACTACAACCGAAGAGATAT 1227
Query 1193 ATGATACAATAGCTCATACTGATTTTGCTACAGAGTCTTCTCCGAGCTTGAGTTCCTCAG 1252
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1228 ATGATACAATAGCTCATATTGATTTGGCTACAGAGTCTTCCCCGAGCTTGAGTTCCTCTG 1287
Query 1253 TTCAGTCTCCATATCCTGTTATTTGTAGTCATTTGGATGACATATATGAAATGATTCTGG 1312
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1288 TTCAGTCTCCATATCCTGTTATTTGTAGTCATTTGGATGACATATATAAAATGATTCTGG 1347
Query 1313 ACAAGTTGGCTAAGCTGGATGATATCTTACCGGTTGTTCTTAAGAAATGCTTGGGCACAA 1372
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1348 ACAAGTTGGCTAAGCTGGATGATCTCTTACCGGTGGTTCTTAAGAAATGCTTGGGCACAA 1407
Query 1373 ATGGAACATGTCCAATCTCTGTCTTCAACTATTCCCTTTTGGTAAACTTCAAGACAAAGC 1432
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1408 ATGGAACATGTCCAATCTCTGTGTTCAACTATTCCCTTTTGGTGAACTTCAAGACAAAGC 1467
Query 1433 TAAGTAGCCACTCTGCTCCCAAGCAAAATGGACATAAGAACTTCAAGCAGCAATTCACTC 1492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1468 TAAGTAGCCACTCTGCTCCCAAGCAAAATGGGCATAAGAACTTCAAGCAGCAATTCACTC 1527
Query 1493 GGAAGGCATCGCGAGAGCTTTTTGTCAAGAAATTTTCCTGCAAGGCGCCAGTTTATCATA 1552
||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct 1528 GGAAGGCCTCGCGAGAGCTTTTTGTTAAGAAGTTTTCCTGCAAGGCTCCCGTTTATCATA 1587
Query 1553 ACTGTAGAATATACGCAAATGATGGACGGTTGCTATGTTATTGCGATAAAAGAAAACTTG 1612
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ACTGTAGAATATACGCTAATGATGGACGGTTGCTATGTTATTGCGATAAAAGAAAACTTG 1647
Query 1613 AATGGTATCTGAATCGTGGACTTGCGAAGCTAGTTGAAGAAAATCCACCTGCGATAATGC 1672
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AATGGTATCTAAACCGTGGCCTTGCGAAGCTAGTTGAAGAAAATCCACCTGCGATAATGC 1707
Query 1673 TTTTGTTTGAGCCCAAAGGACGTCCAGAAGATGAGGGGAATGATTTTTATATCCAGACCA 1732
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1708 TTTTGTTTGAGCCCAAAGGGCGTCCAGAAGATGAGGGGAACGATTTTTATATCCAGACCA 1767
Query 1733 AGAGGAATATATGTGTTGGGTGTGGGGAAGGGAAGCATTATCTCCGTTACCGGATAATAC 1792
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1768 AGAGGAATATATGTGTTGGGTGTGGGGAAGGGAAACATTATCTCCGTTACCGAATAATAC 1827
Query 1793 CGTCGTGCTATAGAGTTCATTTTCCTGAGCACCTAAAAAGTCATAGATCTCATGACATTG 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 CGTCGTGCTATAGAGTTCATTTTCCTGAGCACCTAAAAAGTCATAGATCTCATGACATTG 1887
Query 1853 TTCTTCTTTGTGTGGATTGTCATGAAGTTGCACATGCTGCTGCAGAGAGGTACAAGAAAC 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 TTCTTCTTTGTGTGGATTGTCATGAAGTTGCACATGCTGCTGCAGAGAGGTACAAGAAAC 1947
Query 1913 AAATAGCCACGGAATTTGGAATTCCTCTTTTTGTTCGTAGAGTACTCGATTCAAAAGAAG 1972
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 AAATCGCTACGGAATTTGGAATTCCTCTTTTTGTTCGTAGAGTACTCGATTCAAAAGAAG 2007
Query 1973 CACAAGGGACGTCTTCTTTAGTGGAGGATGAATCAACGGGTAACTCTGAGGATGCAGGTG 2032
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2008 CACAAGGGACGTCTTCTTTAGTGGAGGATGAATCAACTGGTGACTCTGAGGATGCAGGTG 2067
Query 2033 TCTCTCCATTACATCTTAGATCAGCTGCAATGGCGCTCTTGCGACATGGGAACAGAATGC 2092
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 TCTCCCCATTACATCTTAGATCAGCTGCAATGGCGCTCTTGCGACATGGGAACAGAATGC 2127
Query 2093 CATCAAGTCGCCGTGAGGAATTGTTGCAGACTGTCAAGATGTATTACGGTGGACGGGACA 2152
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2128 CATCAAGTCGCCGTGAGGAATTGTTGCAGACTGTGAAGATGTATTACGGTGGACGGGACC 2187
Query 2153 TATCTGAAGAAGATTTGGAAAAAGCTTTACTCATCGGATTGAGCCCTCACGAAAGAAGAA 2212
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TATCTGAAGAAGATTTAGAGAAAGCTTTACTCATCGGATTGAGCCCTCACGAAAGAAGAA 2247
Query 2213 AACTCGAAAGaaaaaaaGGGGTCTCCTTCAAACATTCTGCAGAGGTTGCTGGTATGGACA 2272
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 AACTCGAAAGGAAAAAAGGGGTCTCCTTCAAACATTCTGCAGAGGTTGCTGGTATGGACA 2307
Query 2273 AACAAGAAGATGAAAACAATGATGGGGAGGCTCCCGCAGATTCTGAGAAAATTATGAATG 2332
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2308 AACAAGAAGATGAAAACAATGATGGGGAGGCTCTTGCAGATTTTGAGAAAATTATGACTG 2367
Query 2333 TAGAAAGGAGCACAGTTGCTGATGATAGTGGTGATGGTACAAGTGAAGAAGATGGAGCCT 2392
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2368 TAGAAAGGAGCACAGTTGTTGATGATAGTGGTGATGGTACAAGTGAAGGAGATGGAG-CT 2426
Query 2393 -CAGAGTTAAATGATACTCAATGTAATGGAAATACGCTGCACCAACAAAACTCCAAACTC 2451
|||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 2427 AAAGAGCTAAATGATACTCAGTGTAATGGGAATACGTTGCACCAACAAAACTCCAAACTC 2486
Query 2452 TCTTTGTTAGGACATGGACCGCACGGGAAACAGATTGTAGAATA-CATTTTAAGGGAACA 2510
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 2487 TCTTTGTTAGGACATGGACCGCACGGGAAACAGATCGTAGAATATC-TTTTAAGGGAACA 2545
Query 2511 TGGAGAGGATGGTGTACGTGATTTCTGTCAAAGGTGGAGAAAAGTGTTTGTTGATGCTGT 2570
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 TGGAGAAGATGGTGTACGTGATTTCTGTCAAAGGTGGAGAAAAGTGTTTGTTGATGCTGT 2605
Query 2571 TCATCCTCGCCATTTACCTGGTGGTTGGAATGTTAGTCACAGTGGCCGAAGAGACTTTGG 2630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2606 TCATCCTCGCCATTTACCTGGTGGTTGGAATGTTAGTCACAGTGGCCGAAGAGACTTTGG 2665
Query 2631 AGAATTCAGCGTTTACAATCCCACAAAGAGACTCTCCACCGAGTAG 2676
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 AGAATTCAGCGTTTACAATCCCACAAAGAGACTCTCCACCGAGTAG 2711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132892232007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5