BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320989
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel d... 1260 0.0
> AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel
domain protein | chr2:13794426-13797227 REVERSE LENGTH=1883
Length=1883
Score = 1260 bits (682), Expect = 0.0
Identities = 784/833 (94%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 1 ATGATCCATCAAGCTTTAGCTCTCCCTCGTCCAATTCTCACCGGAGGATTTGGGTCTAAT 60
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 108 ATGATCCATCAAGCTTTAGCTCTCCCTCGTCCTATTCTCACCAGAGGATTTGTGTCTAAT 167
Query 61 GGTGGAGGTGTGTTTCTGCATCAATGTCGAACAAAGAA-CCCTAGAGTTGCATTTTGCGC 119
||||| ||| ||||| | ||||||||||||||||| || |||||| ||| ||||||||||
Sbjct 168 GGTGGCGGTATGTTTGTCCATCAATGTCGAACAAA-AACCCCTAGGGTTACATTTTGCGC 226
Query 120 TTCTGATGATCAAATTTCCAGTTCCAAGTCGAACAAGACAAGGAAAGTAGTGGAGCATGT 179
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TGCTGATGATCAGATAGCCAGTTCCAAGTCGAACAAGACAAGGAAAGTAGTGGAGCATGT 286
Query 180 GTGTTTACTCAAAGCAAAAGAGGGTTTATCTGAGGAGGTAGAAAAAGATATGCTTGATTA 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 287 GTGTTTACTCAAAGCAAAAGAGGGTTTATCTGAGGAAGTAGAAAAAGATATGCTTGACTA 346
Query 240 TCTTTACACTATTCAATATCAAATGAGAGGCATTGTTGCTATATCT-TTAGGTTGTATCG 298
||||||||| | |||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 347 TCTTTACACAACTCAATACCAAATGAGAGGCATTGTTGCTATATCTGTT-GGTTGTATCG 405
Query 299 GTGATAGAAACAATGAAGATTACACGCACGCTCTCTTCATGCGATTCCAGA-GAAAGGAA 357
||||||||||||||||| ||| |||||||||||||| |||||||||||| | ||| ||||
Sbjct 406 GTGATAGAAACAATGAATATTTCACGCACGCTCTCTACATGCGATTCCAAAAGAA-GGAA 464
Query 358 GACCTTGGCAAGTTCTATGAGAACCCTTTCTTCTTGAAAGTTCTCAATGAATATGTTACA 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GACCTTGACAAGTTCTATGAGAACCCTTTCTTCTTGAAAGTTCTCAATGAATATGTTACA 524
Query 418 CCATTCTGCCATGGGCTAACTAATGTGGACTATGAATCAGAGGTTGAAGATGACATCCTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CCATTCTGCCATGGGCTAACTAATGTGGACTATGAATCAGAGGTTGAAGATGACATCCTT 584
Query 478 GCAATATTTCGAAAGGGCGAGGAGTACAACTACGGCGAAGAGTTTGTTCTTCTGGTTACA 537
||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||
Sbjct 585 GCAATATTTAGAAAGGGGGAGGAGTACAACTATGGCGAAGAGTTTGTTCTTCTGATCACT 644
Query 538 TTTGCTAAGAACGTTTCCGACAAGAACACTAAAGGTGCAATGGATTCTTTTGCACAGCTA 597
|||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 645 TTTGCTAAGAGCGCTTCCGAGAAGAACACTAAAGATGCAATGGATTCTTTTGCTCAGCTA 704
Query 598 ACTTCATCTCTTCCATCATTAATTGTCCAGTCCACACAAGGTTCAAACTTTAACGACAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 705 ACTTCATCTCTTCCATCATTAATTGTCCAGTCCACACAAGGTTCAAACTTTAACGGCAGC 764
Query 658 AGTAAGGAATTCACTCATGCAGCAGTAGTTCGATTCCGTTCCTTTGATGCCATGGAGATT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGTAAGGAATTCACACATGCAGCAGTAGTTCGATTCCGTTCCTTTGATGCCATGGAGATT 824
Query 718 TTCGTCGAGGGCAGAGAGTATAAAGATATGTGGCGGTCGCAATTTGAGCCGTTTATAGAA 777
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 825 TTCTTTGAGGGCAGAGAGTATAAAGATATGTGGCGGTCGCAGTTTGAGCCGTTTATAGAA 884
Query 778 AAAG-CAGTAGCTCTTCATTTCTCAGTGGATCCTGTTGGTACCGACGTCATGT 829
|| | ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 885 AA-GTCAGAAGCTCTTCATTTCTCAGTGGATCCCGTTGGTACCGACGTCATGT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5