BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321011

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small ubiquitinre...   451    2e-126


> AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small ubiquitinrelated 
modifier 5 | chr2:13894862-13895582 FORWARD LENGTH=616
Length=616

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 303/330 (92%), Gaps = 9/330 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGAGTTCCTCAGGCACCATCTCTGCTTCATTTGTATCAAAGAGGTCTCGATCTCCT  60
            |||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  107  ATGGTGAGTTCCACAGACACAATCTCTGCTTCATTTGTATCAAAGAAGTCTCGATCTCCT  166

Query  61   G-AA-A-CACCCCATCA-G-AAGATTACTCTCAAGGTCAAGAACCAACAGGGAGCAGAGG  115
            | || | |||||||| | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct  167  GAAACATCACCCCAT-ATGAAAG-TCACTCTCAAGGTCAAGAACCAACAGGGAGCAGAGG  224

Query  116  ATCTGTACAAAATAGGAGCTCATGCACATCTAAAGAAACTAATGAGTGCTTACTGTATGA  175
            || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  225  ATTTGTATAAAATTGGAACTCATGCACATCTAAAGAAACTAATGAGTGCTTACTGTACGA  284

Query  176  AGAGAAACTTAGATTACGGTTCTGTCCGATTCGTCTACAACGGTAGAGAGATCAAAGCAC  235
            ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |
Sbjct  285  AGAGAAACTTAGATTACAGTTCTGTCCGATTCGTCTACAATGGTAGAGAAATCAAAGCTC  344

Query  236  GACAGACTCCTGCTCAGCTGAAGATGGAAGAAGAAGATGAGATCTGT-TCAGTCATGGAA  294
            |||||||||||||||||||| | |||||||||||||||||||||||| |  |||||||||
Sbjct  345  GACAGACTCCTGCTCAGCTGCACATGGAAGAAGAAGATGAGATCTGTATG-GTCATGGAA  403

Query  295  CTTGGCGGTGGCGGTCCTTACACTCCTTGA  324
            ||||| ||||||||||||||||||||||||
Sbjct  404  CTTGGTGGTGGCGGTCCTTACACTCCTTGA  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5