BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321026
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32905.1 | Symbols: | Domain of unknown function (DUF313) ... 619 8e-177
> AT2G32905.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13958449-13959066 FORWARD LENGTH=618
Length=618
Score = 619 bits (335), Expect = 8e-177
Identities = 494/567 (87%), Gaps = 26/567 (5%)
Strand=Plus/Plus
Query 37 AACTTCGAGATGTTGTTACATGTCGCTGCCATGGTTTACGATCAAGAGTATGGTACTCAC 96
||||||||||||||| |||| ||||||| ||||||||||||||| ||||| ||||||||
Sbjct 49 AACTTCGAGATGTTGATACAAGTCGCTGTCATGGTTTACGATCATGAGTACGGTACTCAT 108
Query 97 GA-GGACGAGAAATCAAAGACCATTGACGAAGAAACAGAGATAGAAGCAAGAATCTTTGG 155
|| | || | || |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 109 GACGAAC-ACAAGTCAAAGACCATTGACGAAGATACAGAGACAGAAGCAAGAATCTTTGG 167
Query 156 AGATA-AAGTACCGAGAAAGAACAGAACCCACCGATCATCTCCTTCTT-T------TCG- 206
||||| || |||| |||||||||||||| |||||||||||| |||||| | ||
Sbjct 168 AGATACAA-TACCTAGAAAGAACAGAACTCACCGATCATCTTCTTCTTCTAACAAGACGA 226
Query 207 ---CA--A--GACGCGTGCGATCGAACAACAGAGATCATCGGAACTACAAAACCCTAATA 259
|| | |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 227 TAACACCATGGACGCGTGTGATCGAACAACAGAGATCATCTGAACTACAAAACCCTAA-C 285
Query 260 CC-GAATCGGAACCTTCTTCTTCATCTTGCGTTACCCAGTTCAAGAAACGTCTTCACATG 318
|| ||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 286 CCGGAATCTGAACCTTCTTCTTCCTCTTGCGTTACCCACTTCAAGAAACGTCGCCACATG 345
Query 319 AACACCATGGAAGAGAGAAGTCTCAAGAAACCCAAAATCGATGGTCCTTTAGAGGTGGAA 378
||| | |||||||| | || ||||| || |||||||||| |||||||||||||||||
Sbjct 346 GACA--A-AGAAGAGAGTACTCGCAAGAGACTCAAAATCGATAGTCCTTTAGAGGTGGAA 402
Query 379 CCAATTCAAACGA-CACCACCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGG 437
||||||||||| | |||||||||| ||||||||||| || |||| ||||||||||||| |
Sbjct 403 CCAATTCAAAC-ATCACCACCGGAATGGCTTTTGAAAGTAATGAAGAGAGAAGAGAACAG 461
Query 438 CTACAATCCAAAACTGATCTCAACGAGGAAACTGTTTAAGACTGACCTCGCCAGTCTTCA 497
||||||||||||| ||||||||||||| ||||| | ||||||||| ||||| ||||||||
Sbjct 462 CTACAATCCAAAATTGATCTCAACGAGAAAACTCTATAAGACTGATCTCGCTAGTCTTCA 521
Query 498 AGCACGTCTCTCAGTACCTTTTAGGCAAGTGAAAAATCCAGACTTTTTGACAGAGGAAGA 557
||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 522 AGCACGTCTCTCAGTACCTTTTAAACAAGTGAAAAGTCCAGACTTTTTAACAGAGGAAGA 581
Query 558 AACAAGAATCATAAATGAACAAGCTTT 584
||||||||||||||| |||||||||||
Sbjct 582 AACAAGAATCATAAAGGAACAAGCTTT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5