BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321055
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33255.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1225 0.0
> AT2G33255.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:14098778-14100593 FORWARD
LENGTH=990
Length=990
Score = 1225 bits (663), Expect = 0.0
Identities = 713/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 1 ATGACTTTCCTCTTATCAAGAACATTTATTTCTCTCACTCTCAGACCTTCTTGTTCGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ATGACTTTCCTCTTATCAAGAACATTTATTTCTCTCACTCTCAGACCTTCTTGTTCGATT 77
Query 61 TCCATGGCGAATTTAACGACGAACGCTAAATCTCGCCTGAGAGGCGTTGTATTCGATATG 120
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 78 TCCATGGCGAATTTAACGACGAACGCTAAAACTCGCCTGAGAGGTGTTGTATTCGATATG 137
Query 121 GACGGAACCCTAACTGTTCCGGTCATCGATTTCGCCGCAATGTATAGAGCTGTTCTTGGT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GACGGAACCCTGACTGTTCCGGTCATCGATTTCGCCGCAATGTATAGAGCTGTTCTTGGT 197
Query 181 GAAGATGCTTACAAGCGAATCAAAGCAGAGAGTCCTAGTGGGATTGATATTCTGCACCAT 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 198 GAAGATGCTTACAAGCGAATCAAAGCAGAGAGCCCTAGTGGGATTGATATTCTGCATCAT 257
Query 241 ATCGAGTCGTGGAGTCCTGATAAACAGCAGAAAGCGTATGAAATCATTGCCGATTATGAG 300
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 258 ATTGAGTCGTGGAGTCCTGATAAACAGCAGAAGGCGTATGAAATCATTGCTGATTATGAG 317
Query 301 AAACAGGGAATAGATAAGCTCCAAATCATGCCTGGTGCTGCTGAACTATGTGGCTTTCTT 360
||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 318 AAACAAGGAATAGATAAGCTTCAAATCATGCCTGGTACTGCTGAACTATGTGGCTTCCTT 377
Query 361 GATTCCAAAAAGATAAAGAGAGGGCTAATTACACGCAATGTTCAGAAGGCAATCGACATA 420
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 378 GATTCCAAAAAGATAAAGAGGGGGCTAATTACACGCAATGTTCAAAAGGCAATCGACATC 437
Query 421 TTCCACCAACGTTTTGAGGTTATCTTTTCACCAGCCCTAGGTAGAGAGTTTCGTCCATAT 480
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 438 TTCCATCAACGTTTTGAGGTTATCTTTTCTCCAGCACTAGGCAGAGAGTTTCGTCCATAT 497
Query 481 AAACCAAACCCAGACCCGCTGTTGCATATATGTTCTACATGGGACATCCAACCTAATGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAACCAAACCCAGACCCGCTGTTGCATATATGTTCTACATGGGACATCCAACCTAATGAA 557
Query 541 GTTATGATGGTTGGTGACAGCTTAAAAGATGATATAGCATGTGGGAAACGAGCTGGAGCC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTCATGATGGTTGGTGACAGCTTAAAAGATGATATAGCATGTGGGAAACGAGCTGGAGCC 617
Query 601 TTCACTTGCTTGCTAGATGAGCCCGGAAGGTATGGACCAGACGATTTTTCTGTTTCCGGT 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 618 TTCACTTGCTTGCTAGATGAAACCGGAAGGTATGGACCAGACGATTTTTCTGTTTCCGGT 677
Query 661 CTGCAACCTGATTTTAAGGTTGATTCCTTGTCCAAAATTCAGAACCTATTGGAGACGAAT 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 678 CTGCAACCTGATTTTAAGGTTGATTCCTTGTCCAAAATCCAGAACCTATTGGAGACGAAC 737
Query 721 TTCGACCTGAACCCATAG 738
|||||||||||||| |||
Sbjct 738 TTCGACCTGAACCCGTAG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5