BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321057
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33280.1 | Symbols: | Major facilitator superfamily protein... 1796 0.0
> AT2G33280.1 | Symbols: | Major facilitator superfamily protein
| chr2:14106410-14107720 FORWARD LENGTH=1227
Length=1227
Score = 1796 bits (972), Expect = 0.0
Identities = 1145/1230 (93%), Gaps = 6/1230 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGCTAAGCCTCTCTATGGAGTTCTCTCTGATGTTCTCTACATTGGTGGTGCTCGT 60
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGGTTGCTAAGCCTCTCTATGGAGTTCTCTCTGATGTTCTTTATATTGGCGGTGCTCGT 60
Query 61 AGAGTTCCTTACATCTCCATTGGAGTGCTTTTGCAGGGGT-TAGCATGGGGTTCATTGGC 119
|||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |||||
Sbjct 61 AGAGTTCCTTACATCTCCGTTGGAGTGCTTTTGCA-GGGTCTAGCATGGGGTTCGTTGGC 119
Query 120 GATATTCCCGGGTGCTCGAGAAGTTCTTCCTTCACTTATGGTATTTGTTCTTCTTAGTAA 179
||||||||| |||||| |||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 120 GATATTCCCTGGTGCTAGAGAAGTTCTTCCTTCACTTATGGCATTTATTCTGCTTAGTAA 179
Query 180 CCTTGGAGCTTCCATTACTGAAGTTTCTAAAGACGCTCTTGTTGCGGAATACGGTTTAAG 239
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CCTTGGAGCATCCATTACTGAAGTTTCTCAAGACGCTCTTGTTGCGGAATACGGTTTAAG 239
Query 240 ATATCAGATGAATGGTCTTCAGTCTTATGCGCTTATGGCTTCCGCGGTTGGAGGGATCCT 299
||||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 240 ATATCAGATAAATGGTCTTCAGTCTTATGCACTTATGGCTTCAGCAGTTGGAGGAATCCT 299
Query 300 TGGAAACTTACTCGGTGGATATTTCTTACTCAAGACACCTCCTAGAGTCTTGTTTCTTGC 359
||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 300 TGGGAACTTACTCGGTGGATATTGCTTACTCAAGACACCTCCTAGAATCTTGTTTCTTGC 359
Query 360 TTTTACAGCGTTGTTGTCACTTCAGCTCATTGTTTCTCTATCCTCTAAAGAAGAATCTGT 419
||||||||| ||||| || |||||||||||||||||| |||| |||||||||||||||||
Sbjct 360 TTTTACAGCTTTGTTATCTCTTCAGCTCATTGTTTCTTTATCTTCTAAAGAAGAATCTGT 419
Query 420 TAACTTGCCACCGATCAAAGAGGTAACTCCAGAGATAAGCTCTGTTTTGGGGATTGTAAA 479
||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 420 TAACTTGCCACGGATCGGAGAAGTAACTCCAGAGATAAGCTCTGTTTTGGGGATCGTAAA 479
Query 480 GAAACAGTTTCTGGATCTTATGGTAATTGTTCAGGTAGATGAAATCTCCCAGCCTTTAAC 539
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 480 GAAACAGTTTTTGGATCTTAAGGGAATTGTTCAGGTAGATGAAATCTCCCAGCCTTTGAT 539
Query 540 TTGGATAGTAGCTTCCATTGCAATGGTCCCTCTTCTCTCTGGATCAGTCTTCGGCTACCA 599
|||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 540 TTGGATAGTATCTTCCATTGCATTGGTCCCTCTTCTCTCAGGATCAGTCTTCTGCTACCA 599
Query 600 AACTCAAGTTCTAAACCTCGATCCTTCGGTTATTGGAATGTCAAAGGTTATTGGACAGTT 659
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 600 AACTCAAGTTCTAAACCTTGATCCTTCAGTTATTGGTATGTCAAAGGTTATTGGACAGTT 659
Query 660 GATGCTTCTCTGTTTAACCGTGGTTTATGACCGCTACTGGAAGACACTTCCCATGAGGCC 719
|||||||||||||||||| || |||||||| || |||||||||| ||||||||||||| |
Sbjct 660 GATGCTTCTCTGTTTAACTGTTGTTTATGATCGTTACTGGAAGAAACTTCCCATGAGGGC 719
Query 720 ATTGATCCATATCGTGCAACTCCTCTACGCCTTTTCGTTACTCTTCGATTATATCTTGGT 779
||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 720 GTTGATCCATATCGTGCAACTCCTGTACGCGTTTTCATTACTGTTTGATTATATCTTGGT 779
Query 780 GAAGCAAATAAATCTCGCGTTCGGGATCTCAAACACGGCTTTTGTGCTCTGTTGT-TCTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 780 GAAGCAAATAAATCTCGCGTTCGGGATCTCAAACACGGCTTTTGTGCTCTGTT-TCTCTA 838
Query 839 GTGTAGCAGAAATTCTTTCACAGTTCAAGATTCTTCCTTTCTCTGTTTTGCTAGCAAACA 898
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 GTGTAGCGGAAATTCTTGCACAGTTCAAGATTCTTCCTTTCTCTGTTTTGCTAGCAAATA 898
Query 899 AGTGCCCGGGAGGCTGCGAAGGATCCATTACCTCATTCCTTGCTTCAACTCTGTGTTTAT 958
|||||| |||||||| |||||||| || || || ||||||||||| ||||||||||| |
Sbjct 899 TGTGCCCTGGAGGCTGTGAAGGATCAATCACTTCTTTCCTTGCTTCTACTCTGTGTTTGT 958
Query 959 CATCAGTTGTTAGCGCATTCGCTGGAGTTGGAATGGCTAATATGATCGGGATAACATCGA 1018
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATCAGTTGTAAGCGGATTCACTGGAGTTGGAATGGCTAATATGATCGGGATAACATCGA 1018
Query 1019 AGAATTACACAAACCTGCCAGCAGGAATTCTGATACAGTCTTTGGCAGCTTTGGTGCCTT 1078
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAATTACTCAAACCTGCCTGCAGGAATTCTGATACAGTCTTTGGCAGCTTTGGTGCCTT 1078
Query 1079 TGTGGTTTATCCACTATGTTCCAATGTCAGAGCCTGGTTTTGAGAAAGAAGGAAAGAGAG 1138
|||||||||| || ||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 1079 TGTGGTTTATTCATTATGTTCCAATGTTAGAGCCTGGTTTTGAGAGAGAAGGGAAGAGAG 1138
Query 1139 CTATGAGTAAGAAAAGCAGAAGGAATAGACGAGTAGGGAGAGTCATAGGTCAGGAA-GTT 1197
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1139 CTATGAGTAAGAAAAGCAGAAGGAATAGACGTGTAGGGAGAGTCATAGGTCAGGAAAGTT 1198
Query 1198 TTTGCTTACCGTCGGGAAAGAGAAACATAA 1227
|| |||||||| ||||||||||||||||||
Sbjct 1199 TT-GCTTACCGGCGGGAAAGAGAAACATAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5