BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321074
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 922 0.0
AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 608 4e-173
> AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14165256-14169492 FORWARD LENGTH=3032
Length=3032
Score = 922 bits (499), Expect = 0.0
Identities = 562/592 (95%), Gaps = 6/592 (1%)
Strand=Plus/Plus
Query 336 TGCTTCCAAAAGTGAACTTGGTGGATATTCACCACGGAAAAGAAGGGAGGAAGCATCTAC 395
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2399 TGCTTCCAAAAGTGAACTTGGTGGATATTCACCACGGAAAAGAAGGGAGCAAGCATCTAC 2458
Query 396 CAAGGCTGTATCTCCACCTACTCTTTCTTCCGAGaaaaaaaGTGCTAAATGGGATCTTGC 455
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2459 CAAGGCTGCATCTCCACCTAATCTTTCTTCCGAGAAAAAAAGTGCTAAATGGGGTCTTGC 2518
Query 456 ACCTACTGTAACTTCTGGCATGTTCTCGGGCCCAGTTTTTTCTGGTCTCCAAGCAGCAAC 515
| ||||||||||| |||||||||| |||| | |||| |||||||||||||||||||||||
Sbjct 2519 AGCTACTGTAACTGCTGGCATGTTTTCGGACTCAGTATTTTCTGGTCTCCAAGCAGCAAC 2578
Query 516 TCAGACAGCATATCCTACCATCAGTGAGGCTTCCTTGATGCTTTTGAAGCCACTTATGG- 574
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2579 TCAGACAGCATATCCTACCATCAGTGAGGCTTCCTTGACGCTTTTGAAGCCACTTATGGT 2638
Query 575 -A-GG--G-GACTTTTAGGACGCCACCGCCAAGGCAGATCACTTCATTTGATTCTGTTCA 629
| || | | ||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 2639 TATGGATGCGCCTTTTAGGACGCCACCGGCAAGGCAGACCACTTCATTCGATTCTGTTCA 2698
Query 630 ACTGACCGAATCAACCAGACCTATGAGGAGACTTTACGCAGAAAATGTGCCGGATTCGGC 689
|||||| ||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 2699 ACTGACAGAATCCACCAGACGTATGAGAAGACTTTACGCAGAAAATGTGCCTGATTCGGC 2758
Query 690 CTCTGAGAAGTCTCTGATTGAATGCTTCAATGGCTATATGCTATCTTCAGGGTCCAATCA 749
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2759 CTCTGAGAAGTCTCTGATTGAATGCTTCAATGGCTATATGTTATCTTCAGGGTCCAATCA 2818
Query 750 CATAAAAGGAAGTGAACCATGTATTAGCTGTATTATAAACAAGGAAAAAAGTCAGGCGCT 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2819 CATAAAAGGAAGTGAACCATGTATTAGCTGTATTATAAACAAGGAAAAAAGTCAGGCGCT 2878
Query 810 AGTGGAGTTCCTTACGCCACAAGATGCCTCTGCTGCACTCTCCTTGGATGGCTGCTCCTT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 AGTGGAGTTCCTTACGCCACAAGATGCCTCTGCTGCACTCTCCTTGGATGGCTGCTCCTT 2938
Query 870 TGCGGGTTCAAACCTTAAAATTCGACGCCCTAAAGACTATGTCGGGACAACA 921
||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 2939 TGCGGGTTCAAACCTCAAAATCCGACGCCCTAAAGACTATGTCAGGACAACA 2990
Score = 531 bits (287), Expect = 1e-149
Identities = 320/336 (95%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 1 ATGACAGATAGAGATGGGCTTGGTAGTAAGAAGCGTCTTAGAAGTCTAGTGGTGGCAGAC 60
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1935 ATGACAGATAGAGATGGGCTTTGTAGTAAAAAGCGTCTTAGAAGTCTAGTTGTGGCAGAC 1994
Query 61 GTACCTCGAGATGAAAGTAGTATAAAACCTGACGATGAAGACAAGAGAAAGAATCAAAAT 120
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1995 GTACCTCGAGATGAAAGTAGTATAAAACCTGACAATGGAGACAAGAGAAAGAATCAAAAT 2054
Query 121 GGAGATCATAAGAAGAATAGGGAGATGACTATGTCAAAGAGGCATGATTCC-GGAAAAGT 179
||| |||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||
Sbjct 2055 GGAAATCATAAGAAGAATAGGGAGATAAATATGTCAAAGAGGCATGA-TCCAGGAAAAGT 2113
Query 180 GCACAGTGTTGAAGTTTCAGAGCGAAGGGAGAGAAAGGAACAACCAAAATCACATGAACG 239
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||
Sbjct 2114 GCACAGTGTTGAAGTTTCAGAGCGATGGGAGAGAAGGGAACAACCAAAATCACGTCAACG 2173
Query 240 CGACATGAGAGAGAAAAGGAGGAGATCAAGAAGTCGAGATCATGGGCAGGACAGACAGAA 299
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 CGACTTGAGAGAGAAAAGAAGGAGATCAAGAAGTCGAGATCATGGGCAGGACAGACAGAA 2233
Query 300 AAGGTCATCCCCCTTACCAAGGGCTGAAAAGGCTAC 335
||||||||||||||||||||||||||||||||||||
Sbjct 2234 AAGGTCATCCCCCTTACCAAGGGCTGAAAAGGCTAC 2269
> AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14170146-14173437 FORWARD LENGTH=1367
Length=1367
Score = 608 bits (329), Expect = 4e-173
Identities = 355/368 (96%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 925 ATGGAGATTGTCAGCGTCTTTGGACCTTTGAAAGCATACCGGTTTGTGAGCAACAATGAT 984
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 194 ATGGAGATTGTCAGCGTCTTTGGACCTTTGAAAGCATACCGGTTCGTGAGCAACAATGAT 253
Query 985 CTCAATCAGCGATGCGCTTTCCTAGAGTACACTGATGGATCTGTTACCCTCAAAGCTTGT 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CTCAATCAGCGATGCGCTTTCCTAGAGTACACTGATGGATCTGTTACCCTCAAAGCTTGT 313
Query 1045 GCTGGCCTAAATGGTATGAAGTTAGGTGGCAGTGTAATAACAGCCGTCTGTGTATTTCCT 1104
||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 314 GCTGGTCTAAATGGTATGAGGTTAGGTGGCAGTGTAATAACAGCCGTTTGTGCATTTCCT 373
Query 1105 GATGCATCATCTGTAGCGGTGAATGAGAATCCACCATTCTATGGGATACCTGGTCATGCA 1164
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 374 GATGCATCATCCGTAGCGGTGAATGAGAATCCACCATTCTATGGGATACCTAGCCATGCA 433
Query 1165 AAACCACTTCTTGGCAAGCCTAAGCATATTCTAAAGCTAAAAAATGTGGTTGACCCAGAA 1224
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 434 AAACCACTTCTTGGCAAGCCTAAGAATATTCTAAAGCTAAAAAATGTGGTTGACCCAGAA 493
Query 1225 GATTTCACTTCGCTTTCCGAGCAAGAAGTGAAAGAAATTTTGGATGATGTACGGTTAGAA 1284
||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 494 GATCTCACGTCGTTTTCCGAGCAAGAAGTGAAAGAAATTTTGGAGGATGTACGGTTAGAA 553
Query 1285 TGTGCCAG 1292
||||||||
Sbjct 554 TGTGCCAG 561
Score = 294 bits (159), Expect = 1e-78
Identities = 194/210 (92%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 1291 AGATGGGATACTGACGACAAGATGGAGGAAGAAC-----G-AGACCCCGATGATGTGTTT 1344
||||||||| ||| ||||||||| || ||||||| | ||||||||| ||||| |||
Sbjct 947 AGATGGGATGCTGGCGACAAGATAGAAGAAGAACAAGAAGAAGACCCCGAGGATGTATTT 1006
Query 1345 GAGCCGGGTTGTATCTTCATTGAGTACGGAAGACCAGAAGCGACATGTGATGCAGCCCAT 1404
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1007 GAGACGGGTTGTATCTTCATTGAGTACAGAAGACCAGAAGCGACATGTGATGCAGCCCAT 1066
Query 1405 TCTTTACACGGAAGGCTATATGATAACCGGATTGTGAAAGCAGAATATGTTTCTAAAGAG 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TCTTTACACGGAAGGCTATATGATAACCGGATTGTGAAAGCAGAATATGTTTCTAAAGAG 1126
Query 1465 CTTTACCAAATCAGGTTCCCGAGTGGGTAA 1494
|||||||||||| ||||||| |||||||||
Sbjct 1127 CTTTACCAAATCCGGTTCCCAAGTGGGTAA 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5