BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321080
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33500.1 | Symbols: | B-box type zinc finger protein with C... 1644 0.0
AT1G28050.1 | Symbols: | B-box type zinc finger protein with C... 292 4e-78
> AT2G33500.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr2:14187987-14190254 REVERSE LENGTH=1589
Length=1589
Score = 1644 bits (890), Expect = 0.0
Identities = 1116/1221 (91%), Gaps = 32/1221 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGGTTCTACTAGGGAGAGTGTGGTGGCGTGCGAATTTTGCGGCGAGAGAACGGCG 60
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 209 ATGGGTACTTCTACTACAGAGAGTGTGGTGGCGTGTGAATTTTGCGGCGAGAGAACGGCG 268
Query 61 GTTCTGTTTTGTAGAGCCGATACGGCGAAGCTTTGTTTGCCTTGTGACCAGCACGTGCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GTTCTGTTTTGTAGAGCCGATACGGCGAAGCTTTGTTTGCCTTGTGACCAGCACGTGCAC 328
Query 121 TCTGCGAACCTTCTTTCGAGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGCAAA 180
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TCGGCGAACCTTCTCTCGAGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGCAAA 388
Query 181 GAGCCGGTGACTGTACGGTGCTTCACCGATAATCTCGTCTTGTGTCAGGAGTGTGATTGG 240
||||||||| | ||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 389 GAGCCGGTGTCCGTACGTTGCTTCACAGATAATCTCGTATTGTGTCAGGAGTGTGATTGG 448
Query 241 GATGTTCACGGAAGCTGTTCCTCCGCCGCGACGCATGAACGCTCCGCCGTGGAGGGGTTT 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 449 GATGTTCACGGAAGCTGTTCCTCCTCCGCGACGCATGAACGCTCCGCCGTGGAAGGGTTT 508
Query 301 TCTGGTTGTCCTTCGGTTTTGGAGCTTGCTGCTGTGTGGGGAATCGATTTGGAGGGgaag 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 509 TCAGGTTGTCCTTCGGTTTTGGAGCTTGCTGCTGTGTGGGGAATCGATTTAAAGGGTAAG 568
Query 361 aagaaagaagatgaagaagaCGAATTGACTAAGAATTTTGGGATGGCGTTGGATTCGTGG 420
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 569 AAGAAAGAAGATGACGAAGACGAATTGACTAAGAATTTTGGGATGGGGTTGGATTCGTGG 628
Query 421 GGTTCTGGATCTAACAACGTTCAAGATCTGATCGTTCCTTATGATGTTTCGAT-CAAAAA 479
|||||||||||||||| ||||||||| ||||| |||||||||||||| || | ||||||
Sbjct 629 GGTTCTGGATCTAACATCGTTCAAGAACTGATTGTTCCTTATGATGTGTCT-TGCAAAAA 687
Query 480 GCAAAGCTTTAGCTTCGGGAGGTCTAAGCAGGTAGTGTTTAAACAGCTTGAGTTGCTGAA 539
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 688 GCAAAGCTTTAGCTTTGGGAGGTCTAAGCAGGTAGTGTTTGAACAGCTTGAGTTACTGAA 747
Query 540 GAGAGGCTTCGTTGGCGGTGACGGCGGAGGAGAGATTATGGTTCCGGAGGGAATCAATGG 599
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 748 GAGAGGCTTCGTTGA-----A-GGCGAAGGAGAGATTATGGTTCCGGAGGGAATCAATGG 801
Query 600 CGGAGGAAGCATTTGTCAGCCATCTCCTATG---TC----AG--CA--G---A-GTCCCA 644
|||||||||||||| |||||||||||| | | || | | | | ||| ||
Sbjct 802 CGGAGGAAGCATTTCTCAGCCATCTCCGACGACGTCGTTTACTTCTTTGCTTATGTCTCA 861
Query 645 AAGTCATTGTGGTAATGCTATGCAATGGAATGCTACCAATCATAGCAGTA-CTCT-ACCA 702
||||| ||||||||||| |||||||||||||||||| |||||||||| | | | | ||
Sbjct 862 AAGTCTTTGTGGTAATGGTATGCAATGGAATGCTACTAATCATAGCACTGGC-CAGAACA 920
Query 703 ATCATAGCAATATGGGATTTTAACTTGGGACAGTCCAGGAACCCTGAGGAACCTAGTCCA 762
||| | | ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 921 CTCA--G-A-TATGGGATTTTAACTTGGGACAGTCGAGGAACCCTGATGAACCTAGTCCA 976
Query 763 GTCGAAACTAAAGGCTCTACTTTCACATTCAACGAGGTCACTCATGTCAAGAACGATACC 822
||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||
Sbjct 977 GTCGAAACTAAAGGCTCTACTTTCACATTCAACAACGTTACTCATCTCAAGAACGATACC 1036
Query 823 CGAGCCACCAATGTGAAAGCTTTCAAAGAGACTTACCAGCAGGATGATTCCATCCGCTCA 882
||| |||||||| |||| ||||||||||||| |||||||||||| |||||| ||| ||||
Sbjct 1037 CGAACCACCAATATGAATGCTTTCAAAGAGAGTTACCAGCAGGAGGATTCCGTCCACTCA 1096
Query 883 ACTTCCACCAAGGGACAGGAAATATCTAAGAGCAACAATATTC-TCGCTGCCATTCATTC 941
||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||| ||
Sbjct 1097 ACTTCTACCAAGGGACAGGAAACATCTAAGAGCAACAATATTCCT-GCTGCCATTCACTC 1155
Query 942 GCATAAAAGTTCTAACGACTCCAGTGACTTGCATTGCATGGAACATATTGCTATGACTAG 1001
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 1156 GCATAAAAGTTCTAACGACTCCTGTGGCTTGCATTGCACGGAACATATTGCTATTACTAG 1215
Query 1002 TAATAGAGCTACAAGATTGGTGGCGGCAACAAATGCTGATCTAGAACGGTTGGCACAGAA 1061
||||||||| |||||||||||||||| ||| |||||||||||||| | | ||||||||||
Sbjct 1216 TAATAGAGCCACAAGATTGGTGGCGGTAACGAATGCTGATCTAGAGCAGATGGCACAGAA 1275
Query 1062 CAGAGACAATGCTATGCAGCGGTACAAGGAAAAGAAGAAGACGCGGAGATATGATAAGAC 1121
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1276 CAGAGATAATGCTATGCAGCGGTACAAGGAAAAGAAGAAAACGCGGAGATATGATAAGAC 1335
Query 1122 CATAAGATATGAAACGAGGAAGGCGAGAGCCGAGACCAGGTTGCGTGTAAAGGGCAGATT 1181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1336 CATAAGATATGAAACGAGGAAGGCGAGAGCCGAGACCAGGTTGCGTGTTAAGGGCAGATT 1395
Query 1182 TGTGAAAGCTACAGATCCTTA 1202
|||||||||||||||||||||
Sbjct 1396 TGTGAAAGCTACAGATCCTTA 1416
> AT1G28050.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:9775528-9777810 REVERSE LENGTH=1695
Length=1695
Score = 292 bits (158), Expect = 4e-78
Identities = 273/328 (83%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 32 CGTGCGAATTT-TGCGGCGAGAGAACGGCGGTTCTGTTTTGTAGAGCCGATACGGCGAAG 90
|||||| |||| ||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 176 CGTGCG-ATTTCTGCGGCGAGCGTACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAG 234
Query 91 CTTTGTTTGCCTTGTGACCAGCACGTGCACTCTGCGAACCTTCTT-TCGAGGAAGCATGT 149
|| |||||||||||||| ||||| || ||| | ||||| | | || ||||||||||| ||
Sbjct 235 CTGTGTTTGCCTTGTGATCAGCAAGTTCACACGGCGAATC-TGTTGTCGAGGAAGCACGT 293
Query 150 TCGTTCTCAGATCTGTGATAACTGTAGCAAAGAGCCGGTGACTGTACGGTGCTTCACCGA 209
|| ||||||||||| ||||| || | || ||||| || |||| ||||| ||||||||
Sbjct 294 GCGATCTCAGATCTGCGATAATTGCGGTAACGAGCCAGTCTCTGTTCGGTGTTTCACCGA 353
Query 210 TAATCTCG-TCTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCC-TCCGCC 267
|||||| | | ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 354 TAATCT-GATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGTTGTTCAGTTT-CC 411
Query 268 GC-GACGCATGAACGCTCCGCCGTGGAGGGGTTTTCTGGTTGTCCTTCGGTTTTGGAGCT 326
| | | |||| || ||||||||||| || ||||| |||||||| |||| ||||||||
Sbjct 412 GATG-CTCATGTTCGATCCGCCGTGGAAGGTTTTTCCGGTTGTCCATCGGCGTTGGAGCT 470
Query 327 TGCTGCTGTGTGGGGAATCGATTTGGAG 354
||||||| | |||||| | |||||||||
Sbjct 471 TGCTGCTTTATGGGGACTTGATTTGGAG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5