BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321088

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33585.1 | Symbols:  | unknown protein; Has 31 Blast hits to...   558    1e-158


> AT2G33585.1 | Symbols:  | unknown protein; Has 31 Blast hits 
to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:14223200-14224167 REVERSE 
LENGTH=785
Length=785

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 391/432 (91%), Gaps = 13/432 (3%)
 Strand=Plus/Plus

Query  1    ATGCGAATC-ACATCAAATCG-CTGCTTTTAC--TT-TT-C--TTTCAATTCCATATCGA  52
            ||||||||| | ||||||||| ||||||||||  || || |  ||||| ||||| |||||
Sbjct  152  ATGCGAATCAAAATCAAATCGCCTGCTTTTACTTTTCTTGCAATTTCAGTTCCAAATCGA  211

Query  53   ATCATCATCAAAGTCAAGCAATCCTCAGAGAAGAGATCCAGAAGAACCCTAGACAAG-TA  111
            ||||||||||||||||||||||  |||||||||||||||||||||||| ||||| || | 
Sbjct  212  ATCATCATCAAAGTCAAGCAATTGTCAGAGAAGAGATCCAGAAGAACCTTAGACCAGTTC  271

Query  112  G--TA-TTGAGCATCAAATCAATGGCTAGTAGCTGGAGAAGATCAATTGGGAACGTGAGA  168
            |  || ||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  272  GTATAGTTGGGCATC-AATCAATGGCTAGCAGCTGGAGAAGATCAATTGGAAACGTGAGA  330

Query  169  TCTTTCATCGGAAATTCCATGGGAGGTCTTAGAGGAGGTCAGAGTGCCGCTTCTTGGGTC  228
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  331  TCTTTCATCGGTAATTCCATGGGAGGTCTTAGAGGTGGTCAGAGTGCCGCTTCTTGGGTC  390

Query  229  GTCGCCGGAACTATTGCCTACTTTCTCTGGATTAAGCCAGCTCAAGATCTTAAAAAGGAA  288
            ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||
Sbjct  391  GTCGCCGGAACTATTGCTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAA  450

Query  289  CAAGAGGCTAGAGCAGCTCTTGCAATGTCTGATCCAAACCAATACGTTGAGAAGAGGAAA  348
            ||||||||||| ||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct  451  CAAGAGGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGGAAA  510

Query  349  CCAATCGCTGATCCTCAGGTTACTGGTTTGATTTATGGAAACAAGAACAGAACTGATAAA  408
            ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| 
Sbjct  511  CCAATCGCTGACCCTCAGGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAG  570

Query  409  CCACAGGATTGA  420
             || | ||||||
Sbjct  571  TCAGAAGATTGA  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5