BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321098
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33720.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1101 0.0
> AT2G33720.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr2:14263732-14265202 FORWARD LENGTH=1238
Length=1238
Score = 1101 bits (596), Expect = 0.0
Identities = 856/980 (87%), Gaps = 23/980 (2%)
Strand=Plus/Plus
Query 12 GCCTCTTCCTTTTTCTGCATCAAATACTCAATACTTGTTCTATGGCAAGTCATCGGAGAA 71
||||| ||| |||||||| || || ||||||||||||||| | | | |||||||||| ||
Sbjct 53 GCCTCCTCCCTTTTCTGCGTCGAAGACTCAATACTTGTTCCACGACGAGTCATCGGAAAA 112
Query 72 CCCTAAAAAGAGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAAAACCCAAAGAA 131
| |||||||||||||||||||||| ||||| | ||||||||||||||||||||| || ||
Sbjct 113 CTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAAAACCCTAATAA 172
Query 132 GAGGAAGATGAACTCTGATGATGACCTGAAGGTTTCTTGCATACCAAGCGACTACAAATT 191
|||||||||||||||||| || | || || |||||||||||||||| |||||||||||
Sbjct 173 GAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGAGACTACAAATT 232
Query 192 AACAAAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCACGAATGAAGAAAGGGCACT 251
|||| ||||||||||||||||||||||||||||||||||| || || |||||| ||||
Sbjct 233 AACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATCAAGAAAAGGCAGA 292
Query 252 GGACGAATGGTATGGTGTCTCAACTGAACTAACACTCTTTAAAGATCCGTGGATCATCAA 311
|||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 293 GGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATCCGTGGATCATCAA 352
Query 312 GAAGGTTTTTCACTTTTCTTCTA-TCATGGATAT-G----CATCCCA-T-T--AATACTC 361
||||||||||||||| |||| | || ||||||| | || | || | | |||||||
Sbjct 353 AAAGGTTTTTCACTTTGCTTC-AGTCTTGGATATGGCTCCCAACTCAGTCTCAAATACTC 411
Query 362 TTTGCCTGTTGGACGCCGTCGAGTCGTCAGAAAACCCTGAAGAGAGTTTGGTCTCCCTGG 421
|||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 412 ATTGCTTGTTGGAC-ACG--GAGTCACCAGAAAACGCTGAAGAGAGTTTGGTCTCCCTGG 468
Query 422 ATCTGTGTTTGTATGACAGAACATGGCCACATGATCCCAACGTTGCTTACAATAAACCAA 481
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 ATCTGTGTTTCTATGACAAAACATGGCCACATGATCCCAATGTTGCTTACAATAAACCAA 528
Query 482 CGTCCGGAGAAAAAATGAACCTCGCGTGGATGAGGACTAAGTCGAATGA-AGCAAGAAAA 540
|||||| |||| ||| ||||| |||||||||||||||| |||||| || ||||||||||
Sbjct 529 CGTCCGAAGAAGCAATAAACCTGGCGTGGATGAGGACTATGTCGAA-GAGAGCAAGAAAA 587
Query 541 GAAGAGGAGAGGTACAACGTCTCAACAGAACTAACTCTCCTCACGGTCACCGATCCATGG 600
|||||||||| |||| ||||||| |||||||||||||||||||| ||| | || ||||||
Sbjct 588 GAAGAGGAGAAGTACTACGTCTCGACAGAACTAACTCTCCTCACCGTCGCTGACCCATGG 647
Query 601 ACCTTGAAGAAGGTAATGACCAAATGCAGTCTTGGCCATCTAAAACGTCTTGTTCTAAAG 660
|||||||||| || |||||||||| ||||| ||||| | ||| | |||||||||||||||
Sbjct 648 ACCTTGAAGATGGCAATGACCAAAAGCAGTATTGGCAACCTATACCGTCTTGTTCTAAAG 707
Query 661 GAGAGCTTTGTACACATCCACATTCTGAGATATCTCCCTGTGGATGATCAAATGATGGTC 720
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 708 GCGAGCTTTGTAGACATCCACATTCTGAGATATCTCCCTTTGGATGATCAAATGATGGTC 767
Query 721 CAAGAAGGCTCTGGATTAACAGTCGACGTGTATGATCACGACACTGATTCTACGTACAAG 780
|||||| |||||||||| ||||||| |||||||||||||||||||| ||| | ||||
Sbjct 768 AAAGAAGACTCTGGATTAGCAGTCGAGGTGTATGATCACGACACTGACTCTGTGCACAAT 827
Query 781 CTG-CTTTTAAAGAAATGGGCCAAGTATCCAAGGTTTGTTCTCATCAACGGATGGCATAC 839
||| || |||| |||||||||||| | | |||| ||||||||| ||| |||||||| ||
Sbjct 828 CTGGCTCTTAA-GAAATGGGCCAAATCTTCAAGCTTTGTTCTCGTCAGCGGATGGCGTAA 886
Query 840 GTGCTTTGTC-ACCAGGAGAGGTTTGAAGAAAGGCGATGTGATTGGAATGTATTGGGATC 898
|||||||||| || || ||||||||| || ||||||||||||||||||||||||||||
Sbjct 887 GTGCTTTGTCGAC-AGAAGAGGTTTGCAGGTTGGCGATGTGATTGGAATGTATTGGGATC 945
Query 899 GATCTGAATCTAAGATTCATTTTTGTGTGCTTTCTCGTGC--AC-CAATGGATTCAGCTC 955
| |||||||||||| ||||||||||||||||||||||| | | |||||||||||||||
Sbjct 946 GTTCTGAATCTAAGCTTCATTTTTGTGTGCTTTCTCGTTCCGAAACAATGGATTCAGCTC 1005
Query 956 CTCTTCCTCCAAGTACATAG 975
|||||||||||||| |||||
Sbjct 1006 CTCTTCCTCCAAGTCCATAG 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5