BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321132
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34080.1 | Symbols: | Cysteine proteinases superfamily prot... 1424 0.0
> AT2G34080.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:14393181-14394858 REVERSE LENGTH=1369
Length=1369
Score = 1424 bits (771), Expect = 0.0
Identities = 955/1042 (92%), Gaps = 20/1042 (2%)
Strand=Plus/Plus
Query 1 ATGCCATCAATCATGGTCTTGGTCACTATTTTTACCATTCTTTTCACGACG-TTCAGTAT 59
||| ||||||||||||| ||||||||| |||| | ||||||||||||| | ||||| ||
Sbjct 82 ATGGCATCAATCATGGTATTGGTCACTGTTTTAATCATTCTTTTCACG-GGTTTCAGAAT 140
Query 60 CTCTCAGGCCACGTCTCGTACTGTAACCTTTCACGAACCGTC-GTCGCTTGAAAAACATG 118
|||||| || |||||||||||||| | ||||| ||| | ||| | | |||| |||||||
Sbjct 141 CTCTCAAGCTACGTCTCGTACTGTCATCTTTCGCGAGCAGTCAAT-GGTTGATAAACATG 199
Query 119 AGCAATGGATGGCTCGATTTTCTCGTGTATACCGTGATGAGCTCGAGAAACAA-ATGAGA 177
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 200 AGCAATGGATGGCTCGATTTTCTCGTGAATACCGTGATGAGCTCGAGAAA-AATATGAGA 258
Query 178 CGCGATGTGTTTAAGAAGAACTTGAAGTTCATTGAGAACTTCAACAAAAAAGGGAACAAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CGCGATGTGTTTAAGAAGAACTTGAAGTTCATTGAGAACTTCAACAAAAAAGGGAACAAA 318
Query 238 AGCTACAAGCTTGGTGTCAATGAATTCGCGGATTGGACCAACGAGGAGTTCCTAGCAATA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AGCTACAAGCTTGGTGTCAATGAATTCGCGGATTGGACCAACGAGGAGTTCCTAGCAATA 378
Query 298 CATACCGGACTCAAGGG-C---CT--A---T---CTTCCAAGGTGGTCGACGAAACGATA 345
||||||||||| ||||| | || | | | ||||||||||||| | ||||||||
Sbjct 379 CATACCGGACTAAAGGGCCTAACTGAAGTTTCCCCATCCAAGGTGGTCGCCAAAACGATA 438
Query 346 TCGTCT-AGGTCTTGGAACATCAGTGACATGGTAGGCGTGAGCAAGGACTGGAGAGCTGA 404
|||||| | | |||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 439 TCGTCTCA-GACTTGGAACGTCAGTGACATGGTAGTCGAGAGCAAGGACTGGAGAGCTGA 497
Query 405 AGGAGCTGTGACTCCTGTCAAATACCAAGGCCAATGCGGTTGTTGTTGGGCGTTTTCGGC 464
||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 498 AGGAGCTGTCACTCCTGTCAAGTACCAAGGCCAATGCGGATGTTGCTGGGCATTTTCGGC 557
Query 465 AGTAGCAGCAGTGGAAGGTGTGACTAAAATCGCCGGTGGGAACCTTGTATCGCTGTCCGA 524
||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||
Sbjct 558 TGTAGCAGCAGTGGAAGGTGTGGCTAAGATCGCCGGCGGGAACCTTGTATCTCTGTCCGA 617
Query 525 ACAACAGCTTCTAGACTGCGACAGAGAGTACGATCGAGGTTGCGACGGTGGGATAATGTC 584
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 618 ACAACAGCTTCTAGACTGCGACAGAGAGTACGACCGAGGCTGCGACGGTGGGATAATGTC 677
Query 585 AGACGCTTTCAACTATATAATCCAAAACCGAGGCATCGCTTCGGAGAACGACTACTCTTA 644
||||||||||||||| || ||||||| ||||||||||| || ||||| |||||||||||
Sbjct 678 GGACGCTTTCAACTATGTAGTCCAAAATCGAGGCATCGCATCAGAGAATGACTACTCTTA 737
Query 645 CCAAGGATCAGATGGGAGATGCCGGTCCAGTGCAAGACCGGCTGCACGGATCAGCGGATT 704
|||||||||||||||| |||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct 738 CCAAGGATCAGATGGGGGATGCCGGTCCAATGCAAGACCAGCTGCACGTATCAGTGGATT 797
Query 705 CCAAACCGTCCCTAGTAACAACGAACAGGCCTTGCTTGAGGCCGTATCGAGGCAACCCGT 764
||||||||||||||| |||||||| | ||||||||| ||||| |||||||||||||| ||
Sbjct 798 CCAAACCGTCCCTAGCAACAACGAGCGGGCCTTGCTCGAGGCTGTATCGAGGCAACCAGT 857
Query 765 CTCTGTGTCGATGGACGCGAATGGGGACGGGTTCATGCATTACTCGGGAGGAGTATATGA 824
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 CTCTGTGTCGATGGACGCGACTGGGGACGGGTTCATGCATTACTCGGGAGGAGTATATGA 917
Query 825 TGGGCCTTGTGGGACCAGCTCGAACCATGCGGTTACGTTTGTTGGGTACGGAACGAGCCA 884
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 918 TGGGCCTTGTGGGACCAGCTCGAACCACGCTGTTACGTTTGTTGGGTATGGAACGAGCCA 977
Query 885 GGACGGGACTAAATACTGGCTAGCTAAGAACTCTTGGGGTGAAACTTGGGGAGAAAAAGG 944
||| || ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 978 GGATGGAACTAAGTACTGGCTGGCTAAAAACTCTTGGGGCGAAACTTGGGGAGAAAAAGG 1037
Query 945 TTACATTAGAATCCGAAGAGACGTGGCTTGGCCTCAAGGCATGTGTGGTGTAGCACAGTA 1004
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TTACATTAGGATCCGAAGAGACGTGGCTTGGCCTCAAGGCATGTGTGGTGTAGCACAGTA 1097
Query 1005 TGCTTTTTATCCGGTTGCGTAA 1026
||||||||||||||||||||||
Sbjct 1098 TGCTTTTTATCCGGTTGCGTAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5