BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321134
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34100.1 | Symbols: | unknown protein; Has 35333 Blast hits... 765 0.0
> AT2G34100.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14399534-14401921
REVERSE LENGTH=1281
Length=1281
Score = 765 bits (414), Expect = 0.0
Identities = 708/838 (84%), Gaps = 67/838 (8%)
Strand=Plus/Plus
Query 212 CTGAGGTCAAAGAAAGACCGATTCAACACTGGTCTATGTGCCTTTCTGAGGTCAAAGAAA 271
|||| || ||||||| |||| |||||||||||||||||||| || |||||||||||||||
Sbjct 329 CTGACGTAAAAGAAAAACCGCTTCAACACTGGTCTATGTGCATTGCTGAGGTCAAAGAAA 388
Query 272 AACCGAGCCAACACTGGACTATGCGTGTATCATCGAAAATTCC-AGAGAGTTTCATTCAA 330
||||||||||||||||| ||||||||| | || |||||||| ||||||||||| ||||
Sbjct 389 AACCGAGCCAACACTGGGCTATGCGTGC-T--TC-AAAATTCCCAGAGAGTTTCACTCAA 444
Query 331 GAACAAGGtgatgatgatgatgctattgatgataatgattatgatgatgatgatgatgat 390
| |||||||| ||||||| || | | |||| || |||||| ||||| || ||||| |
Sbjct 445 GCACAAGGTGGTGATGAT--TG-T-T--ATGA-AA--ATTATGGTGATGGTGCTGATGGT 495
Query 391 gat-gatgatgatgattatgatgaAGAAGA-TAGTGAATCGAGTTTGAAGTGGAACGGTG 448
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 496 -ATTGATGATGATGATTATGATGAAGA-GAATAGTGAATCGAGTTTGAAGTGGAACTGTG 553
Query 449 ACTACCAGCTGTTAAAGAGTGGTTATTTGTCTTTCGA-G--GAAGAAGAAGAGGATAATG 505
|||| ||||||||||||||||| || ||||||||||| | |||||||||||||||||||
Sbjct 554 ACTATCAGCTGTTAAAGAGTGGCTACTTGTCTTTCGATGAAGAAGAAGAAGAGGATAATG 613
Query 506 ACGATGATGCAGATGTTGACATGTTT-TCCgaaga-agatgatgattcatggaatgaaga 563
||||||| | |||||||||||| ||| |||||||| || |||||||||||||||||| ||
Sbjct 614 ACGATGAAGAAGATGTTGACAT-TTTCTCCGAAGATAG-TGATGATTCATGGAATGAGGA 671
Query 564 ttttgatgatgaagatgaagaagaGGATACTACAGTTTCTAAATCTTCCGAAAACATGTT 623
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 672 TTTTGATGATGAAGATGAAGAAGCGGATACTACAGTTTTTAAATATTCCGAAAACATGTC 731
Query 624 GGACCTTAATTTGGGGGCCTCGGCGACGAGCTATATCCCTACGACGAGCTATATCCCTAG 683
||| ||| ||||||| || ||||||| |||| ||||| | | | || ||
Sbjct 732 GGAGCTTGATTTGGGA---TCAGCGACGAATTATACCCCTA-G------T-T--CC-TA- 776
Query 684 TTCGTACCATCGTCATAATGAAAAAGATAGTGGTTCAAGTTTGCCGTGGAATGGTGGTTA 743
|| | |||||| | | ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 777 --CG-ATCATCGT-A-A-TGAAAAAGATAGTGGTTCAAGTTTGACGTGGAAAGGTGGTTA 830
Query 744 TCAGCAGTTAAAGAATGTTGACACGTCTTCCGA--A-GAAGATGAAGAATCATGGGATGA 800
|||||||||| | |||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 831 TCAGCAGTTATATAATGTTGACACGTCTTCCGACGAAGAAGATGAAGAATCATGCGATGA 890
Query 801 GGAGGATGATGAAGTTGGGGAGTATCACACTGAAGAAGTGATGGAGATGTCGCGGGAGCA 860
|||||||||||||| |||||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct 891 GGAGGATGATGAAGCTGGGGAATATCACTCTGAAGAAGCGATGGAGATGTCGCGCGAGCA 950
Query 861 GAGAATGAGCAAGCTAAATAATGAATCATTAGTGGTTCATGACGATGAAGATGACGTGTC 920
|||||||||| |||||| ||| | ||| |||||||||||||||||||||| ||
Sbjct 951 GAGAATGAGCGAGCTAAG----GAA--A---GTGCTTCATGACGATGAAGATGACGTATC 1001
Query 921 GGACACGTTACAAGGATTTGTGGATGTCAGGCAAGAGGTGATTGCAAATAATACGGAATT 980
||| | ||||||||| |||| |||| |||| ||||| || |||||||||||
Sbjct 1002 --ACA----A---GGATTTGTGAATGTGAGGCGAGAGACAATTGCGAAGAATACGGAATT 1052
Query 981 TGGTGAGGTCGAGGCCCTTTTACCAGAAGGTGATTGGGTTTACGTTAGGAGGGGTTAG 1038
||||||||||||| ||||||||||||| |||||||||||||| || | ||| | ||||
Sbjct 1053 TGGTGAGGTCGAGACCCTTTTACCAGATGGTGATTGGGTTTATGTGAAGAGTGCTTAG 1110
Score = 433 bits (234), Expect = 2e-120
Identities = 274/294 (93%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGGCGTAGAAGATAACCAATGGTTTGATAAGTTTATGGATGAAATCGGATTGGTA 60
|||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 73 ATGGGAGGCGTAGAAGGTAACCAGTGGTTTGATAAGTTTATGGACGAAGTCGGATTGGTA 132
Query 61 TTTACCAAGGTTGACGAATCGATACAAAAGAGTATTGAACTCTGGACAGAGTTAACCAAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 133 TTTACCAAGGTTGACGAATCGATACAGAAGAGTATTGAACTCTGGACAGAGTTAACCAAA 192
Query 121 GACATATTTGACGAGCAGCCTAACCAAGGCCTGACCGGACAGCCAGACAATGGTGAATCT 180
|||||||||||||| ||||||||||||| | |||||||||||||||| ||||||| ||||
Sbjct 193 GACATATTTGACGACCAGCCTAACCAAGACTTGACCGGACAGCCAGATAATGGTGGATCT 252
Query 181 GGTGAAGAAAATTCCTCTCAATATCCTGTCGCTGAGGTCAAAGAAAGACCGATTCAACAC 240
||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 253 GGTGATGAACATTCCTCTCAATATCCTGTCTCTGAGGTCAAAGAAAGACCGATTCAACAC 312
Query 241 TGGTCTATGTGCCTTTCTGAGGTCAAAGAAAAACCGAGCCAACACTGGACTATG 294
|||| ||||||||||||||| || |||||||||||| ||||||||| |||||
Sbjct 313 TGGTATATGTGCCTTTCTGACGTAAAAGAAAAACCGCTTCAACACTGGTCTATG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5